Aeromonas hydrophila MX16A: BOQ57_20470
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Entry
BOQ57_20470 CDS
T04629
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
aaj
Aeromonas hydrophila MX16A
Pathway
aaj02020
Two-component system
aaj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aaj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BOQ57_20470
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BOQ57_20470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaj03021
]
BOQ57_20470
Transcription machinery [BR:
aaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BOQ57_20470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
TetR_C_5-like
Motif
Other DBs
NCBI-ProteinID:
APJ17099
UniProt:
C5E7P6
LinkDB
All DBs
Position
complement(4384051..4385490)
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AA seq
479 aa
AA seq
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MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPE
EPVDASQLDSSDAMSQDNMPDELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENL
QDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLEDIQTAVSSEDVEVELDEVEAV
LKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIR
VNETYAAMARQARTSQDTQFIRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYG
EEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKFFFSSHVNTEGGGECSST
AIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgacattacagttgcgtctcggccagtccctgaccatgacgccgcaattacaa
caagcgattcgtctgctccagctctccactctggaactccagcaggaaattcagcaagcg
ctcgacaacaaccccttgctggagcaagaggaaaatgatgtgcaggagaccagcccggaa
gagccggtcgatgccagccaactcgactccagcgatgccatgtcccaggacaacatgccg
gacgaactgccggtagataccacctgggaagaggtctactcggccggcacggcccagagc
gcgggcccgatccacgatggtgaagacagcatctatcagggcgaaaccaccgaaaacctg
caggattatttgctgtggcagatgcgcctgacgccgttcagcgacgtggatgccgccatc
gccctcgccatcatcgatgccatcgacgaatccggttacctgacggtgtcgctggaggat
atccagactgcggtaagcagtgaggatgtcgaggtggagctcgatgaggtggaggccgtg
ctcaagcgggtgcagcatttcgacccggtcggcatcgctgcccgctcggtgcaggagtgt
ctgctgatccagctgggccaatactccccggacctgccctggctcaacgaggccaaggag
gtgatcctcgagcacatggacttgctcggcaatcgcgactaccgcaccctggcgcgcaag
acccggctcaaggagagtgacctcaaggaggtgctggatttgatccagcagctggagccg
agacccggcaacggcgtcattcagagcgaatcccagtacgtgatcccggatgtttccgtg
gtcaagaagggcaacaagtgggtggtcgagctcaatccggactcggccccgcgcatccgg
gtcaacgagacctatgccgccatggcccgtcaggctcgcaccagccaggatacccagttc
atccgttcccacctgcaggaagccaagtggttcatcaagagcctggagagccgcaacgac
accctgctcaaggtggccagctgtatcgtcgagcagcagcagggctttttcgaatacggt
gaagaggccatgaaacccatggtgctcaacgacatcgccgaagcggtggagatgcacgag
tcgaccatctcgcgggtcacgacccagaagtacatgcatacaccgcgcggcatcttcgaa
ctgaagttttttttctccagtcatgtcaacacggagggaggaggagagtgctcatcgacc
gcaattcgcgcgctcatcaagaagctggtcacggcggagaatcccgccaagccgctaagt
gatagcaagatcgcggatttgctggccgaacagggtattatggtggcgagacgcacgatc
gcaaagtaccgtgaatccttgttgatcccgccatccaatcagcgcaaacgcctggtttag
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