Aeromonas hydrophila MX16A: BOQ57_20990
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Entry
BOQ57_20990 CDS
T04629
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaj
Aeromonas hydrophila MX16A
Pathway
aaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BOQ57_20990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaj03021
]
BOQ57_20990
03400 DNA repair and recombination proteins [BR:
aaj03400
]
BOQ57_20990
Enzymes [BR:
aaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BOQ57_20990
Transcription machinery [BR:
aaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BOQ57_20990
DNA repair and recombination proteins [BR:
aaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BOQ57_20990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
APJ17191
UniProt:
A0A081UWK9
LinkDB
All DBs
Position
complement(4496140..4500444)
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEEQYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVRTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLSGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLRAHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS
KAMMENLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEVLVARNTLLDEQLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDEMGRTKE
SHKLPYGSVLEVKDGQAVNAGETVANWDPHTHPIITEVAGRLHFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDLNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESGGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHGRINQRAAAARAVGVPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgtgag
cgtatgggccatattgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgacatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacccggcatgaccaacctcgagcgcagccagatgctg
tccgaagagcagtacctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatcttggcattgctgcgcgccatcgatctggaaggcgaagtgcgcacc
atgcgcgaagagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgc
ctgaagctgatggaagctttcctgcagtccggtaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacctccgatctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgctggacctggctgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtcgatgccttgctggacaacggtcgtcgtggccgtgccatcaccggctccaac
aagcgcccgctgaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgtcgactactccggtcgttccgttatcaccgtaggtccgact
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctggagctgttcaagcccttc
atctatggcaagctggaatcccgcggtctggcgaccaccatcaaggccgccaagaagatg
gtggagcgcgaagaagctgtcgtttgggacatcctggacgaagtgatccgcgaacacccg
gtgctgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgtttgaaccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgacggtgaccagatggcggtccacgtaccgctgaccctagaagcccagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccgtctcaggacgtggtcttgggtctgtactacatgacccgcgcccgtatcaacgcc
aagggcgaaggtatggtgctgtccggcccgaaagaagccgagaaggtataccgcgccggt
ctggccgatctgcatgctcgcgtgaaagttcgcatcaccgaatacctgcgtcaggaagac
ggttcgctgcgtgctcacaccgagatgaagaacaccaccgttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgccctgatcgacgagccgaaggtgctgactgct
gcagagcaggctgacctggatgccaacccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgtcatcttcgctgaccagctgatgtataccggtttccactatgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatc
gccgctgcagaagccgaagttgccgagatccaggaccagttcctgtctggtctggtgact
gcgggcgaacgttacaacaaggttatcgatatctgggccagcgccaacgagcgcgtctcc
aaggccatgatggagaacttgtccaaagagcgtaacgtcaactcgctgggtgaagaagaa
gagcaagcctcgttcaacagcatcttcatgatggccgactctggtgcgcggggttccgca
gcccagatccgtcagctggccggtatgcgtggtctgatggccaagccggatggctccatc
atcgagaccccgatcgtcgcgaacttccgcgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagactgcgaactccggt
tacctgactcgtcgtctggttgacgtggcacaggacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgaaggtggcgacgtggtcgaaccg
ctgcgtgagcgcgtgctgggccgtgtggttgccgatgacgtgatcaagccgggtactgaa
gacgaagtgctggtagcacgcaacaccctgctcgacgagcagctgtgtgacctgctggag
cgcaactccgttgaccgcgtgaaggtacgttctgccatcacctgtgagaccgacttcggt
aactgtgctcactgctacggccgtgatctggcccgtggtcacctggttaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgaaccaggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgtgccgctgccgagagcagcattcaggtcaag
aataccggtagcatcaagctgcagaacgccaagttcgttcacaacagtgacgacaaactg
gttatcacctcccgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttatggttccgtgctggaagtgaaagatggccaggccgtgaacgcc
ggtgaaaccgtcgccaactgggacccgcatactcacccgatcatcaccgaagtggcgggt
cgcctgcacttcgaacacatgatcgatggcgtgaccattactcgtcagaccgacgagctg
accggtctctcctccatcgtcgtactggatgtcaacgagcgtccgagcgccggtaaagag
atgcgtccgaccgttaaactggtcgacctgaatggcaaggacgtgatgatcccgggtacc
gatgtagccgcccagtacttcctgccgggcaaggcaatcgtgaacctggaagatggtgcc
aacgtgggcgtgggtgacgcggtagcgcgtatcccgcaagagtccggcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gcaattctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgc
cgtctggtcatcaccccgaccgatggtggcgatgtctacgaggagatgattccgaagtgg
cgtaacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcggacggt
cctgagtctgctcacgacattctgcgtctgcgcggtatcagcccggtcgccaactacatc
gccaacgaagtgcaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgtgcgtcagatgctgcgcaagtgcgagatcctgagcgctggtgacaccgac
ctgatcgaaggcgaacaggttgaagtggctcgcgtgaagattgccaaccgtaagctggtt
gctgagggcaagaccccggccaccttccgtcacatcctgatgggtattaccaaggcatct
ctgagcaccgagtccttcatctccgcggcttccttccaggaaaccacccgtgttctgacc
gaagcggccgttggcggcaagcgtgacgaactgcgtggcctgaaagagaacgtgatcgtg
ggtcgtctgatcccggctggtaccggctttgcctaccaccacggccggatcaaccagcgt
gccgccgcagcccgtgctgttggtgtaccgcaggtgactgccgatgaagctcagcaaaac
ctggcggatctgctcaacgcagccggcagttttgacgaagagtaa
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integrated database retrieval system
