Aminobacter aminovorans: AA2016_0559
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Entry
AA2016_0559 CDS
T04343
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aak
Aminobacter aminovorans
Brite
KEGG Orthology (KO) [BR:
aak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aak03019
]
AA2016_0559
Enzymes [BR:
aak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AA2016_0559
Messenger RNA biogenesis [BR:
aak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AA2016_0559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_30
HA2_N
ResIII
AAA_25
AAA_19
TMEM240
Motif
Other DBs
NCBI-ProteinID:
AMS39498
UniProt:
A0AAC8YJR0
LinkDB
All DBs
Position
complement(576042..578504)
Genome browser
AA seq
820 aa
AA seq
DB search
MIKLPDLPVTAVLPHLAEALAAGNSAVLVAPPGAGKTTLVPLALLDATWRGDGKIVLLEP
RRLAARAAARRMASLLGEEPGATVGYAMRMENKVSAKTRILVVTEGVLARMILDDPELPG
VAAVLFDEFHERSLDGDFGLALALDVQGALRPDLRLIVMSATLDGARVSKLLDGAEVIES
QGRSFPVDIRYDERPAGVAIEDAMAKAIRDALADEPGSVLAFLPGQREIERTAERLDGRV
GADVDIVPLYGMLDGKAQDAAIKPAPAGRRKVVLATAIAETSITIDGVRVVIDSGLSRLP
KYEPASGLTRLETVRASRAAADQRAGRAGRTSPGVAMRLWRAEQTAALPAFSPPEILEAD
LSGFLLDCAAFGVADPTTLAFLDPPPAPALAEAKALLVELEAIDADGRLTASGQAMRKLA
LPVRLAHMVAEAARQGAALEAAQLAVLMTERGLGGDSADLERRLQRFRNERSPRANAARQ
LAERLAWQAGAAGQPSGDAPTPGALLLLAWPDRVAKARGERGRFVLANGSGAAVDAADPL
AGEQYLVVADLQGKAQNARISSAAAVSEVDIRTVLAAHLERKTEASFDREKRSVRVRETV
RIGAVTLSERMLPAPKGEEADGAILQALRTHGLGLLDWGKEAETLRQRLTWLHRGLGEPW
PDMSDEALLDRLEDWLLPFLRGEASFARIGAGVLHDALLSFVPHDLQRKIGTLAPTHFSA
PSGSHVPIRYDGEWPVLAVRVQELFGMDKHPSIAGGTVPLTLELLSPAHRPIQTTRDLPG
FWRGSWADVRSDMRGRYPRHVWPDNPLEAQATARAKPRGT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagctccccgacctgccggtgacggcggtcctgccgcaccttgccgaggcactt
gcggctggcaatagcgccgtgctggtagcacctcccggcgccggcaagaccacgctggtg
ccgttggcgctgctcgatgcgacctggcgcggcgacggcaagattgtgctgcttgagccg
cgccggctggctgcccgcgccgccgcccgccgcatggcgtcgctgctcggcgaggagccg
ggtgcaacggtcggctacgccatgcgcatggaaaacaaggtcagcgcgaagaccaggatt
ctcgtcgtcaccgaaggtgtgctcgcccgcatgatcctcgacgatcccgagctgccgggt
gtcgccgccgtcttgttcgacgagttccacgagcgttcgctcgacggcgatttcggcctc
gcgctggcgctcgacgtgcagggcgcgctgcgacccgatctccggctgatcgtcatgtcg
gcgacgctcgacggcgcccgcgtctcgaagctgctcgacggcgccgaggtgatcgaaagc
cagggccgcagtttccctgtcgacatccgttatgacgagcgcccggcgggcgttgccatc
gaggacgccatggccaaggcgatccgtgacgcgctcgccgacgaaccgggcagcgtgctt
gccttcctgcctggccagcgcgagatcgagcgcaccgccgagcgcctcgatggccgtgtc
ggcgcggatgtcgacatcgtgccgctctatggcatgctcgacggcaaggcccaggacgcg
gcgatcaagccagcgccggcaggccgccgcaaggtggtgctggcgaccgcaatcgccgag
acctcgatcaccatcgacggcgtccgtgtcgtcatcgattccggcctgtcgcggctgccg
aaatacgagccggcgagcggcctgacccggcttgagacagtgcgcgcctcgcgcgccgcc
gccgaccagcgcgccggccgtgccggccgcaccagcccgggtgtcgccatgcgcctgtgg
cgcgccgagcagaccgcagcattgcctgccttctcgccgcccgagattcttgaggccgac
ctctccggcttcctgctcgattgcgccgccttcggcgttgccgacccgacgacgctcgcc
tttctcgacccgccgccggcgcctgctttggccgaggcgaaggcgcttctcgtcgagctc
gaggccatcgacgccgacggccggctgacggcgtccggccaggcgatgcgcaagctggcg
ctgccggtccgtctcgcccacatggtcgccgaagcggcgcgtcaaggggcggcgcttgag
gcggcgcagcttgccgtgctgatgaccgagcgcggtctcggcggcgacagcgcagacctc
gaacgccgcctgcagcgcttccgcaacgagcgctcgccccgcgccaatgcggcgcggcaa
ctggcggagcggctggcgtggcaggcaggcgctgctgggcagccgtcaggtgatgcgccc
acccctggcgctctcctgctgcttgcctggcccgaccgtgtcgccaaagcgcgcggcgag
cgtgggcgcttcgtactggccaatggcagcggtgcagccgtcgacgccgccgatccgctc
gccggcgagcaatatctcgtcgtcgccgacctgcagggcaaggcccagaacgcccgcatc
tcgtccgccgctgccgtctccgaggtcgacatccgcaccgtccttgccgcgcatctggag
cggaagacagaggccagtttcgatagggaaaagcgttccgtccgtgtccgcgaaaccgtc
cgcatcggcgcagtcaccttgtccgaacgcatgctgccggcacccaagggcgaggaagcc
gacggcgccattctgcaggccctgcgcacccatgggcttgggctgctcgactggggcaag
gaggcggagacgctgcgccagcgtctgacctggctgcatcgcggtctcggcgagccctgg
cccgatatgtccgacgaggcgctgctcgatcgcctcgaggattggttgctgcctttcctg
cgcggcgaggcgtcctttgcccgcatcggcgccggcgtgctccacgatgccctgttgtcg
ttcgtcccgcacgacctccagcgcaagatcggaacgctcgcgccaacgcatttcagcgct
ccgtccggcagccatgtgccgatccgttacgatggcgaatggccggtgcttgcggtgcgc
gtgcaggagctgttcggcatggacaagcacccctcgatcgccggtggcacggtgccgctg
acgctcgaactgctgtcgccggcgcaccggccgatccagaccacgcgcgacctgcccggg
ttctggcgcggctcctgggccgatgtgcgctccgacatgcgcggccgctacccccggcat
gtctggcccgacaacccgctggaggcgcaggcgaccgctcgcgcaaagccgcgcggtacc
tga
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