Alteromonas australica H 17: EP13_02545
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Entry
EP13_02545 CDS
T03220
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP13_02545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aal03019
]
EP13_02545
Enzymes [BR:
aal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP13_02545
Messenger RNA biogenesis [BR:
aal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP13_02545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIF97660
UniProt:
A0A075NYI9
LinkDB
All DBs
Position
complement(581281..582588)
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AA seq
435 aa
AA seq
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MPTHLTDTHFSDLPINSKVVDALTAANFNNCTPIQALALPPLLEGLDIAGQAQTGTGKTI
AFLVATFHHLLSKAENVDNSKSNDAHSAGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSL
GLIYGGEGYESQRETLQEGVDIIIGTTGRILDYYKQNVFSLNNIQVAVLDEADRMFDLGF
IKDIRFLFRRMPAASERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTASRVSQEL
FYPSDDDKMLLLLTLLEEEWPDKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKR
LGILEDFTNGKLDILVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGI
AISFACEKYALNLPDIEKYIQHPIPVTDYDSSALLDDVTAPKPRRKRTPNTRNSSRRGSN
KGRGRGKPSHRGNNN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaatagcaaggtggtt
gacgccttgacggcagctaattttaacaactgtacgcctatccaagctctcgctctgccg
cctttacttgaaggcttagacattgcaggacaggcccaaacaggaacgggtaaaaccatt
gcgtttctggtcgctacatttcaccatttgctaagcaaagcagaaaatgtagataacagc
aaatccaatgatgcacattctgcaggccctcgagccatcattatggcccccacccgtgaa
ctcgctgttcaaatctataatgacgccaaattgctcagtgagcataccggattgtcactt
ggtttgatttatgggggcgaaggatacgaaagtcaacgagaaacccttcaagaaggggtg
gatattataattggtacgacagggcgcatactcgattattataaacagaatgtattttca
ctgaataatattcaagttgccgtgcttgatgaagctgacagaatgttcgatttaggcttc
attaaagacatccggtttttgttccgccgcatgcctgccgctagcgaacgtcttagtatg
ttgttctcagccactcttagctaccgcgtacaagaactggcgtatgagcacatgaacaac
cctacccatgtgcaagttgcccctgagcaaaccaccgcaagccgtgtaagccaagagctc
ttttatccgtctgatgacgataaaatgttgcttcttctcactttgcttgaggaagagtgg
ccagacaaggccattgtcttcgcaaatacaaagcacagctgcgaaaaagtgactgactgg
ttaaccgccgatggtcaccgtgtaggcttgctgagtggcgatgttccgcaaaagaaacgc
ttgggtatattggaagacttcacgaatggcaaactggatattttagttgccactgatgtc
gcggcacggggtcttcatattgatgctgtcacccacgtgttcaactatgacttacctgac
gatgctgaagactacgttcaccgcattggccgtacaggtcgggctggacaaagtggtatt
gctattagtttcgcttgtgaaaagtatgccttgaatttaccggatatcgaaaagtatatt
cagcaccctattcccgttaccgactacgacagcagtgctttacttgatgacgtgacagca
ccgaaaccccgtcgtaaacggacaccaaatactagaaactcttctcgtagaggaagtaac
aaagggcgcggaagaggcaagccctcccaccgcgggaacaacaattaa
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