KEGG   Alteromonas australica H 17: EP13_02560
Entry
EP13_02560        CDS       T03220                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aal  Alteromonas australica H 17
Pathway
aal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EP13_02560 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aal03021]
    EP13_02560 (rho)
   03019 Messenger RNA biogenesis [BR:aal03019]
    EP13_02560 (rho)
Transcription machinery [BR:aal03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     EP13_02560 (rho)
Messenger RNA biogenesis [BR:aal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     EP13_02560 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA AAA_22 S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: AIF97662
UniProt: A0A075P2U0
LinkDB
Position
583281..584546
AA seq 421 aa
MNLTELKNKPISELVALAEEMGLENMARARKQDIIFSILKTHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTAQDELQKMWILRKIVHEMSEIDAMEFLISKLSMTKTNDEFFDAMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaaccgaattaaagaataaaccgattagcgagttggttgccctggccgaagaa
atgggcctcgagaatatggctcgcgctagaaaacaagatattattttctcgatactgaaa
actcacgccaaaggcggtgaagacattttcggtgacggggtgttagaaatactgcaggat
gggtttggctttcttcgctctgctgactcatcctatttggccgggccagatgatatttac
gtatcaccaagccagatcagacgctttaacctacgcacgggtgataccattgctgggaaa
atacgtccgccaaaagacagtgaacgatattttgcgttgctaaaaattcgcgaagtaaac
ttcgacaagccagaaaactcgcgtaataaaatcctttttgagaacctgacaccgcttcat
gcagcagatcgcttgcgtatggaacgtggtaatggttcaaccgaagatattactgctcgc
gtattagacttggcctcacctattggtcgtggtcaacgtggtcttatcgtagcgccacct
aaagcgggtaaaacccttcttctgcaaaacattgctcaatctattgctgctaatcaccct
gagtgtgaattaatggtattgctgattgatgagcgacctgaagaagtgacagagatgcac
cgccttgttcaaggtgaggtggtagcctcaacctttgatgaaccagcaagccgacacgta
caagtggctgaaatggtgattgaaaaggcgaagcgcctagtggagcataagaaagacgtt
gttatcttgcttgattccattacccgtttagcccgcgcttacaacaccgtaattccttca
tcagggaaggtgcttaccggtggtgttgatgccaatgcattgcataagcctaagcgtttc
tttggtgctgcacgtaacgtggaagaaggcggtagcttaacaattattgccaccgcgctt
atcgacactggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaacttcaccttaatcgcaaaattgcggaaaagcgtgtattccctgcaattgacttt
aaccgttcgggcacccgtcgagaagaactacttaccgctcaagatgagcttcagaaaatg
tggatactacgtaaaattgtccatgaaatgtctgaaattgacgccatggagttccttatt
agtaagctctctatgaccaaaacgaatgatgaattcttcgatgcgatgcgtcgtcaaaaa
agctaa

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