Alteromonas australica H 17: EP13_03110
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Entry
EP13_03110 CDS
T03220
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP13_03110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aal03019
]
EP13_03110
03009 Ribosome biogenesis [BR:
aal03009
]
EP13_03110
Enzymes [BR:
aal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP13_03110
Messenger RNA biogenesis [BR:
aal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP13_03110
Ribosome biogenesis [BR:
aal03009
]
Prokaryotic type
rRNA helicases
EP13_03110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIF97761
UniProt:
A0A075NWB0
LinkDB
All DBs
Position
complement(695992..697755)
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AA seq
587 aa
AA seq
DB search
MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKQVKIASKVSTASTIRQRFCQVAPHHKLEALTRI
LEVEPFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVVNFDVPYDSESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVVEAAQDDSIESLIPIVEMIKEEAEASPE
VIMAALLKIAQGDEPLILKESDRPDLHSKPPREQRERRDGRESRDRKGKSTRTSRKPEEG
MQRYRIDVGHVHGAKPGNIVGAIANEGNINSKHIGAIEIYDNFSTVDLPAGMPKETQDKL
TGTRVAGQRLSIRAWSDTPPKRESRGGRSAEKGSRDNRGTRDKKRKN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagatctcaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccatcgcctattcaagcagaaagtattccatta
cttcttgaaggtcatgatttactcggtcaggcccagacaggaacaggaaaaaccgccgcg
tttgccctgcctatgttggcaaatattgatcctgagcaacgtaagccgcaattactggta
ctcgcaccgactcgcgaattagcgattcaggtagccgaagcgttccaagtttacgcaagt
tttagccaaaaaattaaagtactgccggtatacggcggtcagtcttatgacaaccaaatt
cgccaacttaaacgtggtgttcaggttgttgtaggtacgccgggtcgtgttatcgaccat
ataaagcgtaaaacattagatttaagcgaacttaaatttttggttctcgatgaagctgac
gaaatgctacgcatgggctttatcgatgacgtagagcttattttaagccatgcaccagaa
gagcgacaaactgcgttgttctcggcaaccatgccagggcctattaaaaagattactcag
cgttatcttaaagaccctaagcaagttaaaatcgcatcgaaggtaagtaccgcaagtacg
attcgccagcgtttttgccaagttgctccacaccataagcttgaagcgttaacccgtatt
ctggaagtggaaccttttgatggcatgattatttttgtgcgcacaaaaaccgctaccgta
gagcttgcagataaactatctgcgcgtggatacgatgttgaaccgcttaatggtgacatt
ccacagaacgcccgtgagcgtactgttgataaattgaagcaaggcaatattgacattttg
gtcgccacagacgtagtagcacgtggcctcgatgttgagcgtgtaagtcacgtggttaac
tttgacgttccttacgatagtgaatcgtatgttcaccgtattggtcgtacaggccgtgct
ggacgccaaggcgatgctattttgtttatttcgcatcgtgaaaagcgcatgctgttctct
atagagaaaaccaccaagcagccgattgaagctatgcccattccttcaattagcgaaatc
aatgaaactcgccttagccgctttaaacaatctgtggttgaagctgcccaagacgatagc
attgaatcgcttattcctattgttgaaatgataaaggaagaagcggaagcgtctcctgaa
gttatcatggctgcgctacttaaaattgcccaaggtgacgaaccgcttatcttgaaagaa
agcgaccgccctgatcttcacagcaagccacctcgtgaacaacgagagcgccgtgacgga
agagaaagccgagatcgtaaaggcaagtccactcgtactagccgcaaaccagaagaaggt
atgcagcgttatagaattgatgtaggccatgtacatggtgctaagccaggtaatatcgtg
ggcgctatcgccaacgaaggtaacatcaattcgaaacacattggcgctatcgagatatac
gataacttcagtacggttgacttacctgcaggtatgccaaaagagacgcaagataagctt
acgggcacccgtgttgcgggccaacgtttgtctattcgtgcttggtcagacacgccacct
aagcgtgaaagccgcggcggacgtagtgctgagaaaggtagccgtgacaatcgcggaacc
cgagacaagaaacgtaagaactaa
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