Alteromonas australica H 17: EP13_08510
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Entry
EP13_08510 CDS
T03220
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP13_08510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aal03019
]
EP13_08510
03009 Ribosome biogenesis [BR:
aal03009
]
EP13_08510
Enzymes [BR:
aal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EP13_08510
Messenger RNA biogenesis [BR:
aal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EP13_08510
Ribosome biogenesis [BR:
aal03009
]
Prokaryotic type
rRNA processing factors
EP13_08510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIF98720
UniProt:
A0A075P1C6
LinkDB
All DBs
Position
complement(1871751..1875053)
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSFEEL
EWDLKVLLKHWDAISGVAAEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVQRRRPDDVVSEASYEVDLMPAVEAETETTTAAPVKREEPALKGLVAPTAAPVVAPK
EAPSKPADVPSLFSRIGKWLSDLFGSEESKEKETKEQQKPASKGHQSRQRNNDDRRRKPR
KNNRRHGQQPQNKEGGDQEQRKPRQDQDEKRNNRNRKPRKAQQPRDEQQTTKPVDKAQSQ
DNSQEPQAQKKREVAERRKRRDTRRSVRVNKDEDTQVQAKNKVPAKAKPVKAMAAEEGNE
KAPKTTKPKANESTPKQEQTQAPKKPKIDETDVIESKAQEEVTPSTPSTQDENANQTQDE
NGQKREGRGRSRRSPRHVRAAGQRRKKDAQNASEDGANVESNDTAQTQAAMPGKLESEVQ
SSETDAPVEPQVAVESTPSNEQSEAQPQAAETPAEATSPAKDVSQAPSEEDSTQADKPGL
LEPASEEAADVVQDELQFDLTSPDADANAKPAKPRVKVPVEAQATPPKQVEIDLNHDGDS
AEAPSAQESSADVAPEVVVEEKAQSSDADVADEKPVTPKSVKTSVINTSLAASSLGKRRA
SHPMTLPASVDDAFTDVALVAKADDTRPAITVCGKQALMRDVVGKASAPTTLPASVDVAS
QHVESAAESDEETESQAANS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcaacaagaagagttgcgagttgccctcgttgat
gggcaacgtttgtatgatttagatattgaaagcccaggacacgagcagaaaaaagccaac
atttacaagggtaaaattactcgcgtagaacctagcttagaagccgcttttgttgattat
ggtgctgagcgccatggctttctccccctcaaagaaattgcccgcacttacttccctaaa
ggttacagattcgaaggtcgtcctaacatcaaggacgttatcaaagaaggccaagaagtt
attgtccaaattgacaaagaagaacgtggccagaaaggggctgcattaaccaccttcttg
tcgttagcgggcagctacctagtattaatgccaaataacccgagagcaggcggtatttct
cgtcgtatcgaaggtgatgagcgtacagagcttaaagaatcattaagcaaacttgatctt
cctgatggcatgggcttaatcgttcgtactgcgggtgtaggcaagtcttttgaagaactt
gagtgggatcttaaagtgctattgaagcactgggatgccatttctggtgtggcagctgag
cgtgaagctcccttccttattcaccaagaaagtaatgttattgtccgtgctattcgtgac
tacttacgtcgcgacattggcgaaatccttatcgacaaaaccagcatatatgaacaagca
ttacagcacattcaattggtacgtcctgacttcgcaaaccgcgtaaaactttaccgtggc
gaagttccattgttcagtcactaccaaattgaaagccaaatagaatcggcatttcaacgt
gaagttcgcttaccgtcaggtggctcaattgttattgatcctaccgaagcactcacctca
attgatatcaactctgcccgcgccacaaaaggcggagatattgaagaaactgcgctgaat
accaacttagaagcagcagacgaaattgcacgtcagctacgcctacgtgatttaggtggc
ttggtggttatcgactttatcgatatgacaccggtaagacaccagcgtgaagttgagaac
cggatgaaagatgcagtacgaagtgaccgtgctcgtgttcaattaggccgtatctctcgc
tttggcttattagaaatgtcacgccaacgcttacgtccttcattgggcgagtcggcacac
catgtgtgtcctcgttgctcaggtcacggcactattcgtggtactgaatctcttgcgctt
tctatcctacgtattcttgaagaagaaagcatcaaagaaaacacggggcaaattgaagcg
cagcttccggtccctgttgccacgtacctgctaaacgaaaagcgtaagtctatccagtta
ctagagaagcgccacggtgtagatttattacttatccctaacgcaaatctagacacgcca
cactatcaagttcagcgccgtcgccctgatgacgtggtgtcagaagcgagctacgaagtt
gatcttatgcctgcggtagaagcagaaacagagaccacaacagccgccccagttaaacga
gaagagcctgcccttaaaggtttagttgcccccaccgcggcacctgttgttgcgcctaaa
gaggcaccatcgaagcctgcagatgtaccttctttgttctctcgtattggtaaatggtta
agcgacctctttggtagcgaagaaagcaaagagaaagaaaccaaggaacagcaaaaaccg
gcaagcaaagggcaccagtcacgtcagcgtaataacgatgacagacgtcgtaagcctcgg
aaaaataaccgtcgtcatggtcagcaaccacaaaacaaagaaggtggtgatcaggaacaa
cgtaagccacgtcaagatcaagacgaaaaacgtaacaaccgcaatcgcaaaccgcgtaag
gcgcagcagccccgtgatgagcaacagaccactaagccggtagataaagcacaaagccaa
gacaacagccaagaaccgcaagcgcagaaaaagcgtgaagttgctgaacgtcgtaagcgt
cgtgatacacgccgcagtgttcgagtgaataaagacgaagatactcaagttcaagctaag
aacaaggtgcccgctaaagcgaagcctgtgaaagcaatggcggctgaggaaggcaacgaa
aaagcgcctaaaacaaccaagccaaaagcgaatgagtcaacccctaagcaagaacagact
caagcgcctaagaagccgaaaatagatgagaccgacgttattgaatctaaggcgcaagaa
gaggtaacgccttctacacctagcacacaagacgaaaatgctaaccagactcaggatgaa
aatggtcagaaacgagaaggcagaggccgctcacgtcgttcacctcgtcatgttcgtgca
gcaggacaacgtcgtaagaaggatgcgcaaaacgcatcagaagacggcgccaatgtagag
tctaacgataccgcgcaaacccaagcagcaatgcccggtaagttagaatcagaggtccag
tcttcagaaacagacgcgcctgttgagccgcaagtcgctgttgagtctacgccaagcaat
gaacaaagcgaagcgcaacctcaagccgctgaaacgccagcagaagctacgtcgccagcg
aaagacgtaagccaagcgccaagtgaagaagactcgacgcaagcagataagcccggtttg
ctagagcctgcaagcgaagaagccgctgatgttgtgcaagacgaacttcagttcgatctt
acttctccagatgctgatgccaatgctaagccagcgaagcctcgggttaaagtgcctgta
gaagcgcaagcaacgccacctaagcaagttgaaatagatttgaatcacgatggcgatagc
gctgaagcaccaagcgcgcaagaaagcagtgctgatgtggccccagaggtggttgtggaa
gaaaaagctcaaagcagtgatgctgacgttgccgacgaaaagccggtaacccctaagtcg
gtgaagacatcggttatcaacacgagtttggcggcaagtagcttaggtaaacgtagggca
tctcaccctatgacattaccggcttcggttgatgatgcatttactgatgtggcactagtg
gcaaaagcagatgatacacgtcctgccatcacggtatgtggcaaacaagcgctaatgcgt
gatgttgttggaaaggcttctgcccctaccacgttgccggcaagcgtagacgtagcctct
caacatgttgagtcggcagctgaaagtgacgaagagactgagtctcaagccgctaacagc
taa
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