Alteromonas australica H 17: EP13_13830
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Entry
EP13_13830 CDS
T03220
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP13_13830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aal03019
]
EP13_13830
03400 DNA repair and recombination proteins [BR:
aal03400
]
EP13_13830
Enzymes [BR:
aal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EP13_13830
Messenger RNA biogenesis [BR:
aal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP13_13830
DNA repair and recombination proteins [BR:
aal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EP13_13830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
SWI2_SNF2
Thioredoxin_8
Cas3-like_C_2
Epimerase
Cys_Met_Meta_PP
DUF2164
Motif
Other DBs
NCBI-ProteinID:
AIF99674
UniProt:
A0A075NYC2
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All DBs
Position
3048645..3050636
Genome browser
AA seq
663 aa
AA seq
DB search
MTSPHSQLLQNLFGFTAFRQGQQEVVEGLLNARSTLAIFPTGSGKSLCYQYVATQLPHLT
LVISPLLALMKDQLSFLHSKGIAAASIDSTLTAEQNKQVMNDVRSGRCKILMVSVERFKN
ERFRQFIESVQVSMLVVDEAHCISEWGHNFRPDYLKLPAYQKELNIPLVLLLTATATQKV
KLDMASRFNIAQENIIQTGFYRPNLNLNVLPVAGINRNKVLLEELQRQQGAGIVYVTLQN
TAQEVAQYLQQNGYAAQAYHAGLHNDVRQSIQQDFMENRLQVVVATIAFGMGIDKSDIRF
VIHYDLPKSIENYSQEIGRGGRDGGTANCTVLANLDGLVTIENFVYGDTPDKSAIRRVID
DISAQAPVHLQAANIKSPPTPTSSSVYQWETQINSLSSISNIRQLPLKTLLVQLELANVI
RPLYAYFAEYKFRFNTEQVDILNLFSKERREFLEAVFTHSNMKKVWGVVNFDSIYAQYGA
ERSRVVAALEYLHEHNHIELASRLITDVYSVDYSLLQQSELADKLARYFAENEQKEVERI
AALVQFFEQDSCLNFNLSAYFDDNQAPRKCGHCSVCEGKVAKLSYSSPIPTPEREQVSAA
MAALRAHLEGKFNDPITISIYCRFLTAMTMPLFTRLKVKQVKGYGSCEHCRYADVKQLVS
ELI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaccccattcacaattgcttcaaaatttattcggttttactgctttccgacaa
ggccaacaagaggttgttgaaggcctactcaacgcacgttctacactagcgatatttccc
actggctctggaaagtcgttgtgctatcaatatgttgctacccagctcccccacttaact
ttggtcatttcacctttattggccttgatgaaagaccagctttcgtttttacacagcaaa
ggtattgcagcggccagcatcgattcaactttaactgctgagcaaaataagcaagtgatg
aatgacgtgcgttctgggcgctgcaaaattttaatggtgtcggtagaacgctttaaaaac
gagcgttttagacagtttatagaatcggttcaagtgagcatgttagtggtagacgaagca
cactgcatttctgaatggggccacaactttcgacccgactatttaaagctaccggcctat
caaaaagaactgaacattcccttagtattattgctaacggctactgccacgcaaaaagta
aagttagatatggccagccgttttaatattgctcaagaaaatattatccaaacagggttt
tatagacctaacctcaatttaaatgtgttacctgtagcaggtatcaatagaaacaaagta
ttgctagaagaattacaacgacagcaaggcgcgggtattgtgtatgtcacccttcaaaac
accgcgcaagaagttgcgcaatacctacaacagaatgggtacgccgcacaagcttaccac
gcaggtctacacaatgatgttaggcaaagtattcagcaagattttatggaaaataggctg
caagttgttgtggctaccatcgcgtttggtatgggcatagacaagtctgacattcgcttt
gttatacattacgatttgccaaagtctatcgagaactacagccaagaaatcggtcgaggc
gggcgagatggaggaacagccaactgcacagtgctggcaaacttagacggtttggtgacc
attgaaaattttgtgtatggcgacacacccgataaaagcgccattcggcgggtgatagat
gatatttcagcgcaagcgcctgtgcacttacaagctgctaatatcaaatctccccctacc
ccaacaagtagcagcgtttaccagtgggaaacgcaaattaacagcttatcgagtataagc
aacattcggcagttacccttaaaaactttattggtacagttagagttagccaacgttatt
cgccccctgtacgcctactttgccgaatataaattccgtttcaatacggagcaagtagac
atccttaatttattttctaaagaacgaagagaattcttagaagcagtttttactcattca
aatatgaaaaaagtatggggagtagtaaatttcgatagcatctacgcacaatatggggcg
gagcgctcgagagttgtggctgcactagagtatttacacgagcataatcatattgagcta
gcgtctcgcttaattaccgatgtgtacagtgttgactattcactacttcaacaaagtgaa
ttagccgacaaattggcgcgctattttgctgaaaatgaacaaaaagaggttgagcgaatt
gccgcgctagttcagttttttgaacaagatagttgtttaaatttcaacttatcagcctat
ttcgatgataaccaagcgccacgtaaatgcggccattgcagcgtttgcgaaggcaaagtc
gcaaaacttagctattcaagccccataccaacaccagagagagaacaagtatctgcagca
atggcagcactaagagcacacctagagggaaaatttaatgacccaatcacgatatccatc
tattgccgatttttaaccgccatgaccatgcctctctttactcgattgaaagtgaagcaa
gttaagggctacggaagttgtgaacactgccgttatgcagatgtgaagcaactagttagc
gagctaatctag
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