Alteromonas australica H 17: EP13_13905
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Entry
EP13_13905 CDS
T03220
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aal
Alteromonas australica H 17
Pathway
aal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP13_13905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aal03019
]
EP13_13905
Enzymes [BR:
aal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP13_13905
Messenger RNA biogenesis [BR:
aal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP13_13905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HEM4
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIF99687
UniProt:
A0A075P8P2
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All DBs
Position
3071886..3073130
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AA seq
414 aa
AA seq
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MSFSALGLCAELLNTVAEKGYTSATPIQKEAIPAILSQRDVIAIAQTGTGKTASFSLPIL
HLLASTQRPQAHGIRALIIVPTRELAAQVADNVDKYSQNVNVRSTAVFGGVRIEPQKFAL
EKGVDILIATPGRLVDLYEQGAINFENLEILVLDEADRMLDLGFIDHIHHIQSLLPEKRQ
TLLFSATFSKEIKALTTAMLRNPMTIELATAQDRIDNITQILHPVDKERKHELLIQLLEN
HDWSQILVFTRTKRGADTLRNDLEAIGITAESIHANRTQHARTLALNGFRSGSIKVLIGT
DLAARGIDIQQLPCVINIDLPYVPEDYIHRIGRTGRASSKGLAISLFSDDEAKQLRAIER
FLGRQFKKTFIAGFTPKPMPKPPVVEKEDDLYGNFEADDKTKRKGKSKGRRKRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttagcgctttaggcctatgtgccgaacttttgaacactgttgctgaaaaaggc
tatacctccgctacccctattcaaaaggaagctattccagccatattaagccagcgagat
gtcattgcgattgcgcaaacaggcaccggaaaaacggccagcttttccttacctattttg
catttattggcttccacgcaaagaccgcaagctcacggtataagggcgctaattattgtt
ccaactcgggagcttgcagcgcaggttgccgataacgttgataaatacagtcaaaacgtg
aatgttcgctcaacggccgtatttggtggtgtacgtatcgagccccaaaagtttgcgttg
gaaaaaggtgtcgacatcctcattgcaacacctgggcgcttggtcgatttatatgagcaa
ggtgcaattaacttcgagaatctcgaaatactcgtgctagacgaagccgatcgcatgttg
gacttgggtttcatcgaccatattcatcacatacaaagtctgttaccagaaaaacgtcag
acgctgctattttcggctactttttcaaaagaaataaaagcactcaccaccgcgatgcta
cgcaaccccatgacaattgaattagccacagcgcaggatcgcatcgacaacatcacacaa
attttgcacccggtggacaaggagcgaaaacacgaactactgattcaactgcttgaaaac
catgattggtctcaaatattggtattcacacgtaccaaacgcggtgcagatacattaaga
aatgatcttgaagcaatagggattactgcagaatctattcacgccaatagaacgcaacat
gcgcgtacattggcattgaatggctttagaagtggcagtataaaagtgttgattggcaca
gacttagccgccagaggcatcgacattcaacaattaccatgtgtgattaatatcgaccta
ccctatgtacccgaagactatattcacagaataggtcgtacaggccgcgcgtcttctaag
gggttagctatctcactatttagcgatgatgaagcgaaacaattgagggctatagaacgc
tttcttggtcgacaatttaagaagacgtttattgctggctttacgccaaagccgatgcca
aagccgcccgttgttgaaaaggaagatgacttatacggaaatttcgaagccgacgataaa
acaaagcgcaaaggcaaatcgaaaggacgtagaaaacgccgctaa
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