Aureimonas sp. OT7: IGS74_14965
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Entry
IGS74_14965 CDS
T06837
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aala
Aureimonas sp. OT7
Pathway
aala03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aala00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IGS74_14965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aala03021
]
IGS74_14965 (rpoC)
03400 DNA repair and recombination proteins [BR:
aala03400
]
IGS74_14965 (rpoC)
Enzymes [BR:
aala01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IGS74_14965 (rpoC)
Transcription machinery [BR:
aala03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IGS74_14965 (rpoC)
DNA repair and recombination proteins [BR:
aala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IGS74_14965 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QOG05860
LinkDB
All DBs
Position
complement(3125992..3130227)
Genome browser
AA seq
1411 aa
AA seq
DB search
MNQEVMNLFNPQVQAQSFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLTEEEYLIATEEYGEDSFTA
LIGAEAIQELLSSMDLEKIAGDLRAELAETTSDLKTKKLMKRLKIVENFLESGNRPEWMI
MSVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIMNENEPGQGMAFSDIGEMEHALH
AKSITLHTKIRGRFKSVDKDGKLVSKVYETTPGRLLIGQLLPKNVNIPFDIANELMTKKN
ISRLIDQVYRHCGQKETVIFCDRIMQLGFKHACMAGISFGKDDMLIPDTKEKLIAETQAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIAEEMMARIKAVEFDDDGRQRPMNSIYM
MSHSGARGSPTQMRQLAAMRGLMTKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTQNGLTMQPIVDAGQVVATLGQRVLGRTA
LEDVVHPVTGDVLVAGGHNIDERDVEVIEKAGVQSIKIRSALTCEVRTGICAVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDQSFLEASYEGTVKIRNRNV
VRDSEGRLVAMGRNMAILILDQGGKERASHRVTYGSRIFVDDGDKVRRGQRIAEWDPYTR
PVLTELEGTVEFEDLVEGLSVTEQADESTGITKRQVIDWRANPRGSDLKPAIVIKGPDGE
VLKLQRGSDARYLLSVDAILSVEPGAKVKAGDVLSRIPMESAKTKDITGGLPRVAELFEA
RRPKDNAVIAEIDGTVRFGRDYKNKRRIVIEPHEDGVEPVEYLIPKGKPFHLQEGDIIEK
GDYILDGNPAPHDILAIRGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
VDSGDSGYIPGDNVDRIELAELNEKLEEEGKKPASGVPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDTLQGLKENVIVGRLIPAGTGGMMTQIRRIATSRDDLIIDDKRKT
SAAGQPDNLLSDMSGSGQVPDGVRQAEGNLR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatctcttcaatcctcaggtgcaggcccagtctttcgattcg
atccggatctcgctggcgagcccggagaagatcctttcctggtcgttcggcgaaatcaag
aagcccgaaacgatcaactaccggaccttcaagcccgagcgcgatggcctgttctgcgcc
aggatcttcggtccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggttaccttgtcgcgcgtgcgccgc
gagcgcatgggccacatcgagctggccgcgccggtcgctcacatctggttcctgaagtcc
ttgccgagccgcatcggcacgctgctcgacatgacgctcaaggatatcgagcgcgtcctt
tacttcgagaactacatcgtgaccgagccgggtctcaccgccctcaaggagcatcagctc
ctgacggaggaagagtatctgatcgccaccgaggagtatggtgaagattccttcaccgcg
ctcatcggcgccgaggcgatccaggagctcctgtcctccatggacctggagaagatcgcg
ggcgacctgcgcgccgagctggccgagacgacatccgatctgaagaccaagaagctgatg
aagcgtctgaagatcgtggagaacttcctggagtcgggcaaccggcccgaatggatgatc
atgagcgttgttccggtgattccgccggacctgcgtccgctggtgccgctggatggcgga
cgtttcgcgacgtccgacctcaacgacctgtaccgtcgcgtcatcaaccgtaacaaccgc
ctcaagcggctgatcgagttgcgcgcgccgggcatcatcatccgcaacgagaagcgcatg
ctgcaggaggccgtcgacgcactgttcgacaatggccgccgcggtcgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cggcagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtgaccggt
ccggaactgaagcttcatcaatgcggcctgccgaagaagatggcgcttgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggctattcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaacgtccggaagtctgggacatcctcgacgaggtcatccgcgag
cacccggtgctgctgaaccgcgccccgacgctgcaccgtctcggcatccaggccttcgaa
ccggttctcatcgagggcaaggcaatccagcttcatccgctggtttgcacggcgttcaac
gccgacttcgacggcgaccagatggccgtccacgttccgctgtccatcgaggcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaatatcctgcacccggccaatggtcagccg
atcatcgtgccgtcgcaggacatggttctgggcctctactacctctcgatcatgaacgag
aacgagcccgggcagggcatggcgttctccgacatcggcgaaatggagcacgcgctgcac
gccaagtcgatcacgctgcacaccaagatccggggtcgcttcaagtccgtggacaaggac
ggcaagctcgtctccaaggtctacgagacgacgccgggtcgtctgctgatcggtcagctt
ctgccgaagaacgtgaacattcccttcgacatcgccaacgagctgatgacgaagaagaat
atctcgcgcctcatcgaccaggtctaccgtcactgcggccagaaggagacggtgatcttc
tgcgatcggatcatgcagcttggtttcaagcatgcgtgcatggccggcatttccttcggc
aaggatgacatgctcatccccgacacgaaggagaagctgatcgcagagacgcaggcgctc
gcgaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtggtcgacgcctgggccaagtgcacggacaagatcgccgaagagatgatggcccgc
atcaaggcggtcgagttcgacgatgacggccgtcagcgtccgatgaactcgatctacatg
atgtcgcactccggtgcgcgcggctcgccgacgcagatgcgccagcttgccgcgatgcgc
ggcctgatgaccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgacggttctcgaatacttcaactccacccacggcgcccgcaagggcctcgcg
gatacggcgttgaagacggcgaactcgggttacctgacgcgtcgtctcgtcgacgtggcg
caggactgcatcatcacgcagtccgactgcggcacgcagaacggcctgaccatgcagccc
atcgtcgatgccggccaggtcgtcgcgacgctggggcagcgtgtcctgggccgtaccgcg
ctcgaggatgtcgtccatcccgtgacgggcgacgttctcgtcgccggtggccacaacatc
gacgagcgcgatgtcgaggtgatcgagaaggccggcgtgcagtcgatcaaaatccgctcg
gcgctgacctgcgaggtccgaacgggcatctgcgcggtctgctacggacgcgatctggct
cgcggaacgccggtcaacatgggcgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctgaccatgcgtaccttccacatgggcggtacggcgcaggtcgtc
gaccagtccttcctggaagcctcctacgagggcacggtcaagatccgcaaccgcaacgtg
gtgcgtgactccgaagggcgtctcgtggccatgggccgcaacatggcgatcctgatcctc
gatcagggtggcaaggagcgggccagccaccgcgtgacctatggttcgcgcatcttcgtt
gacgatggcgacaaggtgcgtcgcggccagcgtatcgccgagtgggatccctatacccgc
ccggtcctcaccgaactggaaggcaccgtcgaattcgaggatctggtcgagggcctgtcg
gtcaccgagcaggccgacgagtcgaccggcatcaccaagcgtcaggtcatcgattggcgc
gccaacccgcgtggttcggacctgaagccggcgatcgtcatcaagggccccgatggcgag
gtgttgaagctgcagcgcggctccgatgcacgctatctcctgtccgtcgacgcgatcctg
tcggtggagccgggtgccaaggtcaaggcgggtgacgtcctgtcgcgtattccgatggaa
agcgcgaagaccaaggacatcaccggtggtcttccgcgtgtcgccgagttgttcgaggcc
cgtcgtccgaaggacaatgccgtgatcgccgagatcgacggtacggttcgcttcggccgc
gactacaagaacaagcggcgcatcgtcatcgagccgcacgaggacggcgtcgagccggtg
gagtatctcatcccgaagggcaagccgttccatcttcaggaaggcgacatcatcgagaag
ggcgactacatcctcgacggcaacccggcaccgcacgacatcctggcgatccggggcgtc
gaggcgttggcttcctatctcgtcaacgagatccaggaagtctatcgcctgcagggcgtg
ctcatcaacgacaagcacatcgaggtgatcgtccggcagatgctgcagaaggtcgagatc
gtcgactcgggcgactccggctatatcccgggcgacaatgtcgaccggatcgagctggcg
gagctgaacgagaaactggaagaggagggcaagaagcccgcctccggcgtgccggtgctg
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatctcggcggcgtccttccag
gagacgacccgcgtcctcaccgaggcggcggtggccggcaagaccgacacgctgcagggc
ctcaaggagaacgtgatcgtcggccgcctgattcccgccggcaccggcggaatgatgacg
cagatccgccgtatcgcgacctcgcgagacgacctgatcatcgacgacaagcgcaagacg
tcggctgccggtcagcccgacaatcttctgtccgacatgtccggatcgggccaggtgccc
gacggtgtgcggcaggcggaaggcaatcttcgctga
DBGET
integrated database retrieval system
