Aliiphycobium algicola: U5922_012370
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Entry
U5922_012370 CDS
T11630
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
aalc Aliiphycobium algicola
Pathway
aalc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aalc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U5922_012370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalc03021
]
U5922_012370
03400 DNA repair and recombination proteins [BR:
aalc03400
]
U5922_012370
Enzymes [BR:
aalc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U5922_012370
Transcription machinery [BR:
aalc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U5922_012370
DNA repair and recombination proteins [BR:
aalc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U5922_012370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
XHP77128
LinkDB
All DBs
Position
complement(2352884..2353900)
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWQELIKPTQLDVKPGNDPARQATIVAEPLERGFGLTMGNALRRVLMSSLQGAAIT
SVQIDNVLHEFSSVAGVREDVTDIVLNLKGVAVRMEVEGPKRLSINAKGPGIITAGDISD
SAGIEILNRDHVICHLDEGADVYMELTVNTGKGYVAAEKNKPEDAPIGLIPIDAIYSPVK
KVAYDVQPTREGQVLDYDKLTLKIDTDGSITPDDALAYAARILQDQLSIFVNFEEPEAAG
REVEDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFEDAF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccataagaattggcaggaactgatcaagccgacgcagcttgacgtgaaacccgga
aacgacccggcgcgccaggcgacgattgttgccgaaccgctggagcgtggctttggtctg
acgatgggcaacgcgttgcgccgggttctgatgagttcgctgcagggtgctgccatcacc
agcgttcagatcgacaacgtgctgcacgagttttcctcggtggccggggtgcgcgaagac
gtcaccgatatcgttctcaacctcaaaggcgttgccgtgcgcatggaagtcgaaggcccg
aagcggctgtcgatcaatgccaaggggccgggaattatcactgccggtgacatctccgac
agcgcaggaattgagattctcaaccgtgatcatgtcatctgtcaccttgacgagggggcc
gatgtttacatggaactgaccgtcaacaccggcaaaggctatgtcgcggcagagaagaac
aaacccgaagatgcgccgattggtcttatcccgattgatgcgatctattcgccggtcaag
aaggttgcctatgacgtgcagccgacccgtgagggtcaggtgctcgattatgacaagctg
acgctgaaaatcgacactgacggttcgattacgccggatgatgcgctcgcctatgcggcg
cggattttgcaggatcagctttcgatcttcgtgaacttcgaagaacccgaagctgccggt
cgcgaagtcgaggatgacgggcttgagttcaacccgctgctgctgaagaaagtggacgag
cttgagctttccgtgcgttcggccaactgcctgaagaacgacaacatcgtttatattggc
gacctgatccagaaaaccgaagccgagatgctgcgcaccccgaacttcgggcgtaaatcg
ctcaatgagatcaaggaagtgctttcgggcatgggtctgcatctgggcatggatgtcgag
gattggccgccggacaatatcgaagacctcgccaagaaattcgaggacgcgttctga
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