Aliiphycobium algicola: U5922_012600
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Entry
U5922_012600 CDS
T11630
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aalc Aliiphycobium algicola
Pathway
aalc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U5922_012600 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalc03019
]
U5922_012600 (pnp)
03016 Transfer RNA biogenesis [BR:
aalc03016
]
U5922_012600 (pnp)
Enzymes [BR:
aalc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U5922_012600 (pnp)
Messenger RNA biogenesis [BR:
aalc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U5922_012600 (pnp)
Transfer RNA biogenesis [BR:
aalc03016
]
Prokaryotic type
tRNA degradation factors
U5922_012600 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Tex_central_region
Motif
Other DBs
NCBI-ProteinID:
XHP77167
LinkDB
All DBs
Position
complement(2387345..2389489)
Genome browser
AA seq
714 aa
AA seq
DB search
MFNVTTKSIEWGEDTLTLETGKVARQADGAVIATLGETSVMAAVTYARKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGFADGEYVLNPEVDDMHQLRDNPEQR
LDLIVAGTKDAVMMVESEAYELSEAEMLGAVTFAHEQIQPVLDLIIDLAEDTAKEPFDFQ
PADYSDLFAAVKKAGEKPMRAAFAITDKQERTTAVAAARDTIKAALSEEQLEDANLGSAL
KKLEAGILRGDVVKTGKRIDGRDTTTVRPITCEAGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVMGPGRREIGHGKLAWRALQAVLPA
NTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKNAVAGVAMGLILEEDGSYA
ILTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGE
MNKALSGAGEFSAHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGIIKI
ASPNGEAIQKAYDMIHSIVAEPEEGAIYKGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGEEAAPENSKKDEDA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgtgacaacgaaatctatcgagtggggtgaagatacccttactctggaaaca
ggcaaggttgcccgtcaggccgacggggccgttattgcgacactgggagaaaccagtgtc
atggcggcagtaacctatgcgcgcaagcaaaagccggggcaggacttctttccgctgacg
gtgcattatcaggaaaaatactatgccgcaggcaaggtgccgggcggtttcttcaaacgc
gaggcgcggccgaccgagaaagaaaccctgaccgcacgtctgatcgaccggccgatccgg
ccgctgttcgtgccgggcttcaaaaacgaagttctggtgatgtgtacggtgctgagccac
gatctggtgaatgacccggatattgtggcgatgatcgcggcttcggcggcgctgactatt
tcgggcgtaccgttcatggggccgatcgccggttgccgtgtgggctttgccgatggcgaa
tacgtgctgaaccccgaagtggatgatatgcaccagttgcgcgacaatcccgagcagcgc
ctcgacctgattgttgcaggcaccaaggacgccgtgatgatggtggaatcggaagcatat
gagctttcggaggcggaaatgctgggcgcggtgacattcgcgcatgagcaaattcaaccg
gtgctcgacctgattattgatctggccgaggataccgcgaaagagccgttcgacttccaa
cccgcagattacagcgatctttttgcggcggtgaagaaagcaggcgagaagccaatgcgc
gcggcctttgcgattaccgacaagcaggagcgcaccactgctgtggctgcggcgcgcgac
accatcaaggccgcccttagcgaagagcagttggaagatgccaatcttggctcggcgctc
aagaagctggaagccggtattttgcgcggtgacgtggtgaagaccggcaagcggatcgac
gggcgcgacaccaccacggtgcgcccgatcacctgtgaggcggggctgctgccgcgcacc
catggatcggcgctgttcacgcgcggcgaaacgcaagggcttgtcgtgaccacgctgggc
accggcgacgatgagcaattcatcgacgcgctgcacgggaatttcaaatcgaacttcctg
ctgcattacaacttcccgccctattcggtgggtgaagttggccgggttatgggaccgggc
cgccgcgagatcggccatggcaagttggcctggcgcgcgcttcaggcggttttgcccgcg
aacaccgattttccatataccatccgggtggtttccgagatcacggaatccaacggttct
tcttcgatggcctccgtttgtggcggatcgttgtcgatgatggacgcgggcgtgccgctt
aagaatgcggttgctggtgtggctatggggctgatccttgaagaggatggctcttatgcg
atcctgaccgatatcctgggtgatgaagatcaccttggcgatatggatttcaaagtggcg
ggcacggaaaacggcattacctcgctccagatggatatcaaggtggcgggcatcacgccg
gaaatcatggaaaaggcgttggctcaggccaaggatgggcggatgcacatcttgggtgaa
atgaacaaggcgctttcgggtgcgggtgagttcagcgcccatgcgccgcgtatcgagacg
atgcaggtgccgaccgacaagatccgcgaagtgatcggttcgggcggcaaggtgatccgc
gagatcgtcgaggtgtcgggtgccaaggtcgacatcaacgacgatgggatcatcaagatc
gcctcgcccaatggtgaagccatccagaaggcttatgacatgatccattcgatcgtggca
gagccggaagaaggcgcgatctacaagggtacggtggtcaagatcgttgatttcggtgct
ttcgtgaacttctttggcaagcgtgacgggctggtgcatgtcagccagatcgagaatcgg
cggttgaaccatccgtcagatgtgctgaaggaaggtcaggaagtctgggtaaaattgctg
ggctttgatgatcgcggcaaagttcgcctgtcgatgaaggttgtcgatcaggagaccggt
gaagaagccgcgcctgagaatagcaagaaagacgaggacgcctga
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