Aliiphycobium algicola: U5922_015070
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Entry
U5922_015070 CDS
T11630
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aalc Aliiphycobium algicola
Pathway
aalc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U5922_015070 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalc03021
]
U5922_015070 (rho)
03019 Messenger RNA biogenesis [BR:
aalc03019
]
U5922_015070 (rho)
Transcription machinery [BR:
aalc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
U5922_015070 (rho)
Messenger RNA biogenesis [BR:
aalc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U5922_015070 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
AAA_22
ATPase_2
AAA_25
AAA
OB_RNB
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XHP77595
LinkDB
All DBs
Position
complement(2911035..2912306)
Genome browser
AA seq
423 aa
AA seq
DB search
MTTERISLADLKAKHPKELVALAEELEIENASTMRKGEIMFSVLNERAEDGWEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPEMIRKFSLRTGDTIDGELSQPLENERYFVLKD
VSSINFEDPEKARHKIAFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVAPIGKGQRSL
IVAPPRTGKTVLLQNIAHSIESNHPEIYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEELLVNSKDLSKTFVLRRILNPMGTTDAIEFLIGKLKQTKSNAEFFDS
MNG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagaacgtatttcgcttgccgacctgaaggcaaagcaccccaaggaacttgtc
gctcttgctgaagagcttgagattgagaacgcatccaccatgcgcaagggcgagattatg
ttctcggtcctaaacgagcgtgcagaagatggctgggaaatctccggtgacggtgttctc
gaagtgctccaggatggtttcggtttcctgcgttcgcctgaagcaaactacctgccgggc
cccgacgatatctatgtttcgcccgaaatgatccggaaattttccttgcgcaccggcgat
acaattgatggtgagctgtctcaaccacttgaaaatgaacgttattttgtattgaaagat
gtctcatctatcaattttgaagacccggaaaaagcacgccacaagattgccttcgataat
ctcacaccgctctaccccgatgagcgcctgaaaatggaaatcgaagacccgaccatcaag
gaccgctcagcccggattattgatctggtcgctcctatcggcaaaggtcagagatcgctc
atcgttgcaccgccgcggacgggtaaaacggtgctgttgcagaacatcgcccatagcatt
gaatccaaccaccccgagatttacctcatcgtgctgctgattgatgaacggccagaagag
gtcacagacatgcagcgttccgtcaagggagaggtgatttcctcaaccttcgacgaaccc
gcctctcgccatgttgccgtttccgaaatggtgatcgaaaaggccaagcggcttgtcgaa
cataagcgcgatgtggtgattctgctcgattccatcacccgccttggccgcgcgttcaat
accaccgttccgtcatcgggcaaggtgcttacaggcggcgttgatgcgaatgccctgcaa
cggcccaaacgtttcttcggcgctgcgcggaacatcgaggaaggcggctcgctcaccatt
atcgcgaccgctctgatcgacaccggcagccggatggacgaagtgatcttcgaagaattc
aaaggcaccggcaactccgagatagtgcttgatcgcaaggtcgctgataagcgagtcttc
ccggcgatggacatcctcaaatccggcacccggaaagaggagcttctggttaattctaaa
gacctctcgaaaaccttcgtcctgcgccggattctcaatccgatgggcaccacagatgcc
atcgaattcctgattgggaagctcaagcaaaccaagtcgaacgccgagttctttgattcg
atgaatggatga
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