KEGG   Alteromonas algae: ACOJRU_02195
Entry
ACOJRU_02195      CDS       T11409                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aale  Alteromonas algae
Pathway
aale03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aale00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACOJRU_02195 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aale03021]
    ACOJRU_02195 (rho)
   03019 Messenger RNA biogenesis [BR:aale03019]
    ACOJRU_02195 (rho)
Transcription machinery [BR:aale03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACOJRU_02195 (rho)
Messenger RNA biogenesis [BR:aale03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACOJRU_02195 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA AAA_22 S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: XQM97436
LinkDB
Position
502350..503615
AA seq 421 aa
MNLTELKNKPISELVALAEEMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHANDRLRMERGNGSTEDITARVLDLASPIGRGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPECELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKQDELQKMWILRKIVHEMSEIDAMEFLISKLSMTKTNDEFFDAMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaaccgaattaaaaaataaaccgattagcgagttggttgccctggccgaggaa
atgggcctggaaaacatggcgagagccagaaaacaagacatcattttctcgatactgaaa
acgcatgctaaaagcggcgaagatattttcggtgacggggtactcgaaattttacaggac
ggttttggctttctgcgttcagcagactcgtcatatcttgctggtccagacgatatttat
gtatcacctagtcaaatccgcaggttcaatctgcgtacgggtgacaccatcgctggaaaa
attagaccgcctaaagacagcgagcgctattttgcgttgctaaaaattcgtgaagtaaac
tttgataaaccagagaactcgcgaaataaaatattatttgaaaaccttactccgcttcat
gcaaacgatcgtttgcgcatggaacgtggaaatgggtcaacagaagatattactgcccgt
gtactagacttggcgtcgccaattggtagaggtcaacgtggtcttatcgttgcaccacca
aaagcgggtaaaaccttattacttcagaatatcgcccagtctatcgcggcaaaccaccca
gagtgtgagcttatggtgttgctcatcgacgaacgtcctgaagaagtaactgaaatgcac
cgtcttgtgcaaggtgaagtagttgcctcaacgtttgatgagccggccagtcgccacgtt
caagttgccgaaatggtaattgaaaaagcaaagcgtcttgttgagcataagaaagatgtg
gttatccttcttgattcaattacccgtcttgcccgtgcatacaacaccgttattccgtcg
tcaggtaaagtattaaccggtggtgttgatgcaaacgcactgcataaaccaaagcgtttc
tttggtgcggcacgtaacgttgaagaaggtggtagcttaactatcattgcaacagcactg
attgatactggctctaagatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaattacaccttaaccgcaaaattgcggaaaagcgtgttttcccagctatcgacttt
aaccgttctggtacacgtcgtgaagagcttcttaccaaacaagacgagttgcaaaaaatg
tggatcttacgaaagatcgtgcatgaaatgtctgaaatcgacgcaatggaattccttatc
agtaagttgtcaatgaccaagacaaacgatgagttctttgatgcaatgcgaagacaaaaa
agttaa

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