Alteromonas algae: ACOJRU_02795
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Entry
ACOJRU_02795 CDS
T11409
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aale Alteromonas algae
Pathway
aale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOJRU_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aale03019
]
ACOJRU_02795
03009 Ribosome biogenesis [BR:
aale03009
]
ACOJRU_02795
Enzymes [BR:
aale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACOJRU_02795
Messenger RNA biogenesis [BR:
aale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACOJRU_02795
Ribosome biogenesis [BR:
aale03009
]
Prokaryotic type
rRNA helicases
ACOJRU_02795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XQM97545
LinkDB
All DBs
Position
complement(623688..625466)
Genome browser
AA seq
592 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVERFDGMIIFVRTKTATVELADKLSARGFDVEPLNGDIPQNARERTVDKLKQGAIDIL
VATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVIDATKDDSIESLIPIVDMIKEEAEASPE
VLMAALLKIAQGDEPLILKESDRPDIHSRPEREPRDSRERKGRDGRESRDGRERKPRAPR
VNRPPEEGMQRYRIDVGHVHGAKPGNIVGAIANEANINSKNIGAIEIYDNFSTVDLPSGM
PKETHDTLQATRVAGQRLSIREWSETPPKRDGRGARPGKDSRGNRENRKRKN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagacctcaatctaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagcagagagtattccatta
ctgcttgaaggtcacgatttactcggtcaggctcagactggaacaggaaaaaccgctgcg
tttgcccttccaatgctggcaaatatcgatcctgaacaacgtaagccgcaattactggta
ttagccccaactcgtgaattagctattcaggttgcagaggcgtttcaggtttacgcgagc
tttagtcaaaaaattaaagtacttccagtatacggtggccaatcgtatgacaaccaaatt
cgtcagcttaaacgtggcgtgcaggttgttgtaggtacaccaggtcgaattatcgaccat
ataaagcgcaaaacattagatttgagcgagcttaagtacttagtacttgacgaagccgat
gaaatgctacgcatgggctttattgacgacgtagagcttattcttagccacgcacccgct
gaacgccaaaccgcgttattttcagcgactatgcctgggccaattaagaagattactcag
cgctacttaaaagatcctaagcacgtaaaaatagcgtcaaaggttagtaccgcgagcaca
attcgccagcgctactgtcaaatcgcacctcatcacaaacttgaagcgttaacgcggatc
atggaagttgagcgttttgacggcatgattatctttgtgcgcacaaagacggcgacagtt
gaacttgcagacaaactttctgcacgtggtttcgacgtagaaccgttaaacggtgacatt
ccacagaatgcgcgtgaacgtactgtagataagctaaaacaaggcgccattgatattctt
gttgctactgacgtagtagcgcgtggattggacgttgagcgtgtaagtcacgttattaac
tatgacgtcccttacgatagcgagtcatatgttcaccgtattggtcgtacaggccgtgcg
ggtcgccaaggtgacgctattttgtttatctctcaccgtgaaaagcgcatgcttttctct
attgagaaaacaaccaagcagcctattgaagcaatgcctattccttcaatcagcgaaatt
aatgaaacgcgtttaagccgtttcaagcagtcggttattgatgcaacaaaagacgatagc
atcgagtcgcttattcccatcgtggatatgattaaagaagaagcagaagcgtctcctgaa
gtcttgatggctgcgttgcttaaaatagcacaaggcgacgagcctcttattttgaaagag
tcagatcgtcctgatatacatagccgtcctgagcgtgaacctcgtgattcacgtgaacgt
aaaggcagagatggaagagaaagccgtgatggtcgtgagcgtaagccgcgcgcaccacgt
gtaaatcgtccacctgaagaaggtatgcaacgctaccgtattgacgtaggtcacgtacac
ggtgcgaagcctggcaatatcgttggcgctatcgccaatgaagcgaatattaattcgaag
aatattggcgccattgaaatttacgataactttagtaccgtagatttaccatcaggcatg
ccgaaagagacacacgacacgcttcaagctacccgtgtagctggacaacgtttgtctatt
cgcgaatggtcagaaacgccacctaagcgtgacggccgtggcgctcgccctggcaaagac
agccgtggtaaccgcgaaaaccgtaagcgtaagaactaa
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