Alteromonas algae: ACOJRU_12940
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Entry
ACOJRU_12940 CDS
T11409
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aale Alteromonas algae
Pathway
aale03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aale00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOJRU_12940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aale03019
]
ACOJRU_12940
Enzymes [BR:
aale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACOJRU_12940
Messenger RNA biogenesis [BR:
aale03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACOJRU_12940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
UvrD-helicase
CMS1
SDC3_C
DUF4347
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XQM96125
LinkDB
All DBs
Position
2886464..2887708
Genome browser
AA seq
414 aa
AA seq
DB search
MSFSTLGLCTELLSTVTEKGYSEPSPIQKNAIPAILNGRDVIAIAQTGTGKTASFSLPIL
QLLAEKPRQQEEGIRALILAPTRELAAQVAKNVETYSQNMNIRSTAVFGGVRIEPQKHAL
QQGVDILIATPGRLLDLYQQGDINVDNLEILVLDEADRMLDLGFVEHIQHLQSLLPEQRQ
TLLFSATFSKEIKTLATQMLKNPETIELATAHDHIENITQILHPVDKARKHELLIHLINN
NDWSQILVFTRTKRGADTLRNELEALDIAAESIHANRTQQARTKALDGFRDGSIKVLIGT
DLAARGIDIQQLPCVINIDLPYVPEDYIHRIGRTGRASSKGLAISLYSDDEAKQLRAVER
FTGRQFKKTFVEGFIPKPKPKPAAATEEDALYGNFEADDKSQGKRKSKGRRKRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttagcactttaggcctttgtactgaacttttaagtacggttactgaaaaaggg
tactctgagccatcgcccattcaaaagaacgccattcctgctattttaaatgggcgagat
gtgatcgccattgcacaaacaggcacagggaaaaccgctagtttttcgttacctatattg
cagttgttggcagaaaaaccacgccaacaagaagaaggaataagagcacttatccttgcg
cccacgcgtgagcttgccgcgcaagttgccaaaaacgttgaaacttacagtcaaaacatg
aacattcgctcaacggcagtatttggtggtgtgcgtattgagccgcaaaaacatgccttg
cagcaaggtgttgatattcttattgccacgccaggacgtttgctagatttatatcagcaa
ggggatattaacgtcgataacctcgaaatattagttttagatgaagccgaccgtatgttg
gatttgggctttgttgaacatattcagcatctacaaagcttattacctgaacagcgtcaa
acgctactgttctctgccacgttttcaaaagaaataaaaacgctagcgacacagatgctt
aagaatcctgaaacgattgaactggcaaccgcacacgatcatattgaaaacatcacacag
atactgcacccggtagacaaagcgcgcaaacatgaacttcttattcacttaataaacaat
aacgactggtctcaaatattagtgttcacgcgaacgaaacgcggtgcagataccttgcga
aatgagcttgaagcattagatattgctgccgaatcgattcatgcgaatagaacgcaacaa
gcgcgcacgaaagcattagacggttttagagatggcagtataaaagtattaataggtacc
gaccttgcagcaaggggtatcgacattcagcaactgccttgtgtaataaatatcgatttg
ccatatgtacccgaagactatatccaccgtatcggccgcacaggcagagcatcatcgaaa
gggttagcgatatcgttatacagtgacgacgaagcaaagcaactaagagcggttgaacgt
tttaccgggcgacaatttaagaaaacgtttgtagaggggtttattcccaaacccaagccc
aaaccagcggctgcgactgaagaagacgcgttatatggaaattttgaggctgacgataaa
tcgcaaggtaaacgcaaatcaaaaggacgtagaaagcggcgctag
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