| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
aalg Arenibacter algicola
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:aalg00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AREALGSMS7_00005 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:aalg03021]
AREALGSMS7_00005 (rpoC)
03400 DNA repair and recombination proteins [BR:aalg03400]
AREALGSMS7_00005 (rpoC)
Enzymes [BR:aalg01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AREALGSMS7_00005 (rpoC)
Transcription machinery [BR:aalg03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AREALGSMS7_00005 (rpoC)
DNA repair and recombination proteins [BR:aalg03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AREALGSMS7_00005 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(9247..13545)
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| AA seq |
1432 aa
MARLKDNNTIKRFDKISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGEEIQKMDFLSEEEYLNILESIPQENQY
LEDTDPNKFIAKMGAECLIDLLARIDLSQLSYELRHKANTETSKQRKTEALKRLQVVEAL
RESQENRENRPDWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMQLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERKSTPEV
AVKGEGLTFYSYEEVVIAFNEGKLDLNAGIKVRAKDFNEAGELVNQIIPTTVGRVLFNMV
VPEQAGYINEVLNKKSLRDIIGNILSVTDVPTTAEFLDKIKTMGYEFAFKGGLSFSLGDI
IIPPEKHEMIADANTQVDGIMANYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINIEDCETLRGVQVEALKKNE
EIVETLGERILGRVSLHDVYDPISEELLLRAGQEIMESDVKKIEASPVEKVEVRSALTCE
AQKGICGKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LEARFGGIAEIEDLRTVSSQDGEGKKSDIVISRTSEIKVVDAKSGITLSTNNIPYGSNLF
IKNGEKIEKGQVICSWDPYNGVIVSEFPGQIAYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLLIKNNKDEVLRSYNLPVGSHIMVDDGDKINEGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIEDPGDTIFLENQLVHKDDFIQENDEIFGQKVVEDAGDSENLKPGQIVSAREL
RDENSILKRNDKNLVTARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHKIPAGTGMRDYENIIVGSKEEYDEIMARKEELKF |
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| NT seq |
4299 nt +upstreamnt +downstreamnt
atggctagactaaaagataataataccattaaaaggttcgataaaatttcaatcggtttg
gcatctccagaagctattttggcagagtcaagaggtgaggttttgaaacctgaaactatt
aactatagaacgcacaagcctgagcgggacggtctattctgtgagcgtatttttggtcct
gtaaaggattatgaatgtgcctgtggaaaatataaaagaattcgttaccgcggtattgtt
tgtgatcgttgtggggtagaggtaacagagaaaaaggtacgtagagatagggtaggacac
attaatttggttgttcctgttgcccatatctggtatttccgttccttgcccaataagatt
ggttacctattaggtttgccttccaagaaattggatatgattatttactacgagcgttat
gtagtaattcagccaggtattgccaagggacccgatggtgaggaaatccaaaaaatggat
ttcttgagcgaagaggagtatttgaatatattggagtccattccacaggagaatcaatat
ttggaagatactgacccaaacaagtttatcgctaaaatgggtgcggaatgtcttattgat
cttttggcaagaatagacttgagccaattgtcttatgaattaagacataaggccaatacc
gaaacttccaaacaacgtaagacagaggccctaaaaagacttcaagtagttgaagctttg
agggaatcacaagaaaatagggagaacaggccggattggatgatcatgaaggtaattcca
gttattccaccggaattacgtcctttagtgccattggatggtggtcgttttgctacttcg
gatttgaacgatctttacagaagggttattataagaaacaaccgtcttaagagattggtc
gaaattaaggctccagaggtaattcttagaaatgagaaacgtatgcttcaggaggcagtg
gattctttatttgataacacacgtaaggcatctgcagttaaaaccgaatcaaatagaccg
ttgaagtcactttcagattcattgaaaggtaagcaaggtcgattccgtcaaaaccttttg
ggtaaacgtgtggattattccgcccgttcggtaatcgtcgttggacctgaaatgcagttg
tttgaatgtggtttgccaaaagatatggcggctgaactatacaagccttttgtaatccgt
aaattgattgaaagaggtattgtaaaaacggtgaaatctgccaagaagatcatagataag
aaagagcctgtagtttgggatattcttgaaaatgttttaaaaggacatcctgtattattg
aaccgtgctcctactttgcacagattgggtattcaagcattccagccaaagcttattgaa
ggtaaggctatacgtttgcatccattggtatgtactgcattcaacgcggattttgatggg
gatcaaatggcagttcacttgcctttgggacctgaggctattttggaggcacaactttta
atgttggcatcacataatattttgaaccctgcaaacggttcacctattaccgtaccatca
caggatatggtcttgggtctgtattatatgaccaaagaaagaaagtctactccagaagta
gcagtaaaaggagaagggttgactttctattcctatgaagaggtggttattgcctttaat
gaagggaaattggatcttaacgcgggtattaaggtacgtgccaaagattttaatgaggct
ggtgaactagttaatcagatcattccaactacagttggtagggtattgtttaacatggta
gtaccagaacaggcaggatacattaacgaggtattgaacaaaaagtcgcttagggatatt
attggtaatatcctaagtgttaccgatgttcctacaaccgcggagttcttggataaaata
aaaactatgggttatgaattcgcttttaaaggtggattgtcctttagtttgggagatatt
attattccgccagagaagcatgaaatgattgcggatgccaatacacaggtagatggtatt
atggccaactataacatgggtcttattaccaataacgaacgttacaatcaggtaatcgac
gtatggacatcgaccaatgctatgttgacagaattggcaatgaaacgtattcgtgaagat
cagcaaggatttaactctgtgtatatgatgttggattctggtgcaaggggctccaaggag
cagattcgccagttgaccggtatgcgtggattaatggcgaaaccaaagaaatctactgct
ggaggtggggaaattattgaaaaccccattttgtccaactttaaagagggtctatccatt
cttgaatactttatatctacccacggtgcacgtaaggggcttgcggatacggcgttgaaa
acggcggatgcgggttatctaacacgtcgtttggtggatgtttcacaagatgtaattatc
aatattgaggattgtgaaacactaagaggggttcaagttgaggctcttaagaaaaatgaa
gagattgttgaaactttaggggaacgtatccttggaagggtttcattacacgatgtttat
gatcctatttctgaagaattgcttttaagggcaggtcaggaaattatggaatccgatgtt
aagaagattgaggcatccccagttgaaaaagtagaggtgcgttctgccttgacatgtgag
gcccagaaaggtatctgtggtaaatgttatggacgtaacctgtctaccaataaaatggta
caacgaggtgaggctgtaggtgtagtagcagcacagtctatcggtgaaccaggaacacag
ttaacattgcgtactttccacgtgggtggtattgcaggtaacatttccgaggaaaataaa
ttggaagccagatttggtggaattgcagaaattgaagatttaaggacagtttccagtcaa
gacggagaaggtaaaaaatccgatattgtaatttccaggacatcagagattaaggttgta
gatgcaaaatctggaataaccctaagtaccaataacattccttacggttctaacttgttc
attaagaatggtgaaaaaatcgagaaaggtcaagttatttgttcttgggatccatacaac
ggagttattgtttcggaattccctggacagatcgcatatgagaatatagaacagggtatt
acttatcaagtagagattgatgaacaaactggattccaagaaaaagtaatttcggaatct
aggaacaagaaattgatacctaccctattgatcaagaacaataaggatgaagtgttgcgt
tcttacaaccttccggttggatcgcacattatggttgacgatggagataagattaatgaa
ggtaaaattttggtcaaaataccacgtaaatcagctaaggctggggatattacggggggt
cttccaagagttaccgaattgttcgaagctcgtaacccatctaaccctgctgttgtttcc
gagattgatggtgttgtttcctttggtaagataaagagaggtaaccgtgagataatcatc
gaatccaaattgggtgaggttaagaaatacttggtgaaattgtcgaatcaaattcttgtt
caagaaaatgattacgtacgtgccgggatgccattgtccgatgggtctatcactcctgag
gatatccttgcaatcaaaggaccttcagctgtacaacaatacttggtgaacgaagttcag
gaagtatatcgtttacaaggggtgaagatcaatgataagcactttgaggtagtagttcgt
caaatgatgcgtaaggtgcgtattgaggatccgggagacactattttcttagaaaatcaa
ttggttcacaaggatgatttcatccaggagaacgatgagatttttggacagaaagtggta
gaggatgctggtgattccgaaaacctaaaaccaggtcagattgttagtgctcgtgaatta
agggatgaaaactcgattcttaaacgtaatgataagaatttggttacggcaagggatgct
gtagcagcaactgctacacctatcctacaaggaattacacgtgcttccttgcagacgaaa
tcatttatctcggccgcttctttccaagagacgaccaaagtacttaacgaggctgcggta
agcggtaaggtagatactctggaaggattgaaagaaaacgtaattgttggtcataaaata
ccagcaggaacgggaatgagggattatgaaaatatcattgtaggttccaaagaggagtac
gatgaaatcatggcccgaaaagaggaattgaaattctaa |
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