Arenibacter algicola: AREALGSMS7_02938
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Entry
AREALGSMS7_02938 CDS
T04973
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
aalg
Arenibacter algicola
Pathway
aalg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AREALGSMS7_02938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalg03021
]
AREALGSMS7_02938
03019 Messenger RNA biogenesis [BR:
aalg03019
]
AREALGSMS7_02938
Transcription machinery [BR:
aalg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AREALGSMS7_02938
Messenger RNA biogenesis [BR:
aalg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AREALGSMS7_02938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
Mor
Med3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASO06371
UniProt:
A0A221UZQ2
LinkDB
All DBs
Position
complement(3414484..3416163)
Genome browser
AA seq
559 aa
AA seq
DB search
MFEISDLKSKKLPELQEIAQGLNVAKFKTLKKLDLVYQILDVQASNPKIVQERTEATTEE
SSTAKPKRSRIIKSKPKETAAKAPGKPEMKSVAPTEKSSTPEETSTAVEDKKEDTKRERK
PRQHNNPVQAKKEFQKGAPQQNASQQNTSQPNKPQHKKNPHHQKGNVDKNNSNFDKDLKN
KYKEPEFEFDSIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDT
VLGNVRPPKEGEKYFPLIKVNKINGIDPQIVRDRVSFEHLTPLFPQEKFNLAERQSTIST
RIIDLFSPIGKGQRGMIVSQPKTGKTMLLKDIANGIAANHPEVYQIILLIDERPEEVTDM
QRNVRGEVVASTFDKEATEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQP
ASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLTIIATALTETGSKMDEVIFEEFKGTG
NMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWIMRKYLADMNPVEAMEFI
EQRFRQTKNNEEFLLTMNQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagatttcagatttaaaatcaaaaaagcttcctgagcttcaggaaatcgcccag
ggcctaaatgttgccaaatttaaaactttaaaaaagctcgatttggtctatcaaattttg
gatgttcaagcatccaatccaaaaattgttcaagagagaaccgaggcaactacagaagaa
agcagtacggccaagcccaaaaggtccagaataatcaagtctaagccaaaagaaacggca
gcaaaggcacccggaaaaccggagatgaaatctgttgcaccaacagaaaaatcgagtacc
ccagaagaaacttctactgcggttgaagataaaaaagaggatacaaaacgcgaaagaaaa
cctcgccaacacaataatcctgtacaggcgaaaaaggaatttcaaaaaggtgcaccacaa
caaaatgcatcacagcaaaatacttcgcaacccaacaaacctcaacataaaaaaaatcca
caccatcaaaaaggtaatgttgacaaaaacaacagcaattttgataaggacctaaaaaac
aaatacaaagaaccggaatttgagttcgacagtattatagaaagtgaaggggtcctggat
attatgcaggatggctacggatttttaagatcctcggattacaactatctttcttctcca
gatgatatatatgtatcccagtcccaaataagattatttggattaaaaactggagatacc
gtacttggaaatgtacgtccaccaaaagaaggtgagaagtatttcccgcttattaaggta
aataagataaacgggatagatccccaaatagttagggatagggtgtcttttgaacacttg
acccctttattcccacaggaaaaattcaatcttgcggaaagacaaagtaccatttctaca
agaattatagatctattcagtcctataggaaaaggtcagagaggtatgatcgtatcccag
ccaaaaactggtaagaccatgcttttaaaggatatagccaatggtattgctgccaatcat
ccagaagtttatcaaattatccttttgatagatgaacgtccagaggaagttacggacatg
caacgtaatgttcgtggtgaggttgttgcctctacctttgacaaggaagcgacggaacat
gttagggttgccaatattgttttggaaaaagctaaacgtttggtagaatgtggacacgat
gtggttatcctgttggattccattacccgtcttgcccgcgcctacaatacagttcaaccg
gcctccggaaaggtcttgagtggtggtgtcgatgccaacgcccttcataaaccaaagcgt
ttctttggagctgcgcgtaatattgaaggtggtggttccttaaccattattgcaacagca
cttactgaaaccggctctaaaatggatgaagtaatctttgaggaattcaaaggaactggt
aacatggaattacaattggatagaaaaatatccaaccgtagaatattcccggccatcgat
cttacttcgtctagtacaagaagggacgaccttttattggatgaaaacaccattcagaga
atgtggatcatgagaaagtatttagcggacatgaatcctgtagaggccatggaatttatt
gaacaaagatttaggcaaaccaagaacaacgaagagtttttgcttaccatgaaccaataa
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