Arenibacter algicola: AREALGSMS7_04721
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Entry
AREALGSMS7_04721 CDS
T04973
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aalg
Arenibacter algicola
Pathway
aalg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AREALGSMS7_04721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalg03019
]
AREALGSMS7_04721
03009 Ribosome biogenesis [BR:
aalg03009
]
AREALGSMS7_04721
Enzymes [BR:
aalg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AREALGSMS7_04721
Messenger RNA biogenesis [BR:
aalg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AREALGSMS7_04721
Ribosome biogenesis [BR:
aalg03009
]
Prokaryotic type
rRNA helicases
AREALGSMS7_04721
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
AAA_22
RecG_N
Cas3-like_C_2
DUF3194
Motif
Other DBs
NCBI-ProteinID:
ASO08110
UniProt:
A0A221V3I1
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All DBs
Position
5537030..5538826
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AA seq
598 aa
AA seq
DB search
MTKFEALGLKKSLLDAISDLGFESPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
LIQKIDSASRTTQGLILSPTRELCLQITNELTLYSKYEKGVNVVAIYGGASITDQARQIK
RGAQIVVATPGRMKDMIGRGLVDISKIDYCVLDEADEMLNMGFMEDIKDILSNTPKEKST
WLFSATMPREVAVIAKKFMHSPQEITVGTKNSGATTVQHEYYVVGGRDRYPALKRLADTN
PDIFSVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKAIENK
IQQDFISKKIPTGMEICEIQLYHLANKIKDTKVNEEVDNYLPAINDVLKGIDREELIKKI
VSVEFTRFFNYYNKTKDLNTSDSGDRAERGGSRDGDSRIPADGNVRYFINVGEKDGYDWM
SLKDFLRDTVNLGKDDIFKVDVKDSFSFFNTDAAATEAILKTFTEFKVDGRFVNVEVSKN
PGGGGGGGRGRRDRSRSGGGRDSRDNDRNKGRRRDRSASKGSPSSSGKRRTKRKSDFF
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcattggggctaaagaagtccctattggatgctatttctgattta
ggatttgaatcgccttcagaagtacaagaaaaagctattccaatcttattggaaagtgaa
accgacttagttgcactagctcaaacgggcaccggtaaaaccgcagcatttggattcccg
ctaattcaaaaaatagatagcgccagcagaactacacaaggtttgatcctttcccctacc
agggaactttgcttgcagatcaccaacgaacttacattatattccaaatatgaaaaaggg
gttaatgttgttgcaatctatggtggtgccagtattaccgatcaggcgagacaaataaaa
aggggtgcccaaatagtggtagctactccaggtagaatgaaagacatgattggtcgtggc
ttggtagatatatccaaaattgattactgtgttcttgatgaggccgatgaaatgcttaat
atgggctttatggaggatattaaagatattctttccaacactccaaaagaaaagtccact
tggctattttcagcaaccatgcccagagaggtagcggtgatagctaaaaaattcatgcac
agtccacaagaaattacggtaggaacaaaaaattcaggagcaactacggtacaacacgaa
tactatgtagtaggtggtcgtgatcgttaccctgctctaaaaagacttgccgataccaat
ccggatatattctcagttattttctgtagaactaaaagggacacccaaaaggtggctgaa
aagttgatcgaggacggttacaacgccggtgcactacacggggatttgagtcagaaccag
agagatttggtaatgaactctttccgtaaaaaacaaatacagatgttggttgcaacagat
gtagccgcacgtggtattgatgttgatgatattacacatgtaatcaattatcaattacca
gatgaaatagagacctacacacatcgaagtggacgaaccggaagagctggtaaatcaggg
atctccatggttattgtgaccagaagtgaacttaggaagataaaggccatcgaaaataaa
attcaacaggattttatttccaaaaaaattcctacgggaatggaaatatgtgaaatacag
ctttaccatttggccaacaagatcaaggacaccaaggtaaacgaggaagtagacaattac
ttgcccgctataaatgatgtgcttaaaggtattgaccgtgaagaacttatcaaaaaaata
gtttcagtagaatttacccgtttcttcaattactacaacaaaaccaaggatctaaatact
tccgattcaggcgatcgtgccgaaagaggaggatccagggatggcgatagccgtatccca
gctgacggtaacgtaagatattttattaatgtaggtgaaaaggatggctatgattggatg
tccctaaaagatttcttaagggacactgttaatttgggcaaggacgatattttcaaagtt
gatgtaaaagatagtttctctttcttcaatacggatgcggccgctaccgaagccatttta
aaaaccttcactgaatttaaggttgatggccgatttgtaaatgttgaggtatctaaaaat
cctggcggaggcggaggcggaggccgtggaagacgtgatagaagtagaagtggcggaggt
cgtgattctagggacaatgatcgcaacaaaggaagaagaagggaccgaagtgcgtctaaa
ggaagtcccagtagttccggaaaaagaagaactaaaagaaaaagtgatttcttttag
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