Anopheles albimanus: 118458908
Help
Entry
118458908 CDS
T08930
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aali
Anopheles albimanus
Pathway
aali03013
Nucleocytoplasmic transport
aali03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aali00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118458908
03015 mRNA surveillance pathway
118458908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aali03019
]
118458908
Enzymes [BR:
aali01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118458908
5.6.2.5 RNA 5'-3' helicase
118458908
Messenger RNA biogenesis [BR:
aali03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118458908
mRNA cycle factors
Common to processing body (P body) and stress granule
118458908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
Helicase_RecD
NPHP3_N
DEAD
AAA_22
ATPase
nSTAND3
SRP54
AAA_16
AAA_32
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
118458908
NCBI-ProteinID:
XP_035777763
UniProt:
A0A2C9GGV3
LinkDB
All DBs
Position
2:2760543..2765657
Genome browser
AA seq
1182 aa
AA seq
DB search
MSVDAFDGTSGSLTFVDTEENFFVGADSQGSDFDFRDFTLPSQSQTQASQHDHLGGGSQV
NGFGRRIGVDPSKLSSITSAIGELQFEEDEDETEPVENKQLPAHACRYCGIHEPSTVVMC
NICKKWFCNGRGNTSGSHIVNHLVRAKHREVTLHADGPLGETVLECYSCATRNVFLLGFI
PARSDSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKVPSDQEQMRARQV
SAAQINKLEELWKENVDATFQDLEKPGIDKEPQPVQLRYVDGYQYQNTFGPLIKLEADYD
EKLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDELKLRYVGEMHKPWSCL
GHVIKVPDNYGDDVGLELKHNHQAPVECTVNFAVDFIWKGTSFERMQQALRKFAMDAKSV
SNYIYSRLLGNVRADGNEEVLFRFTLPKHFSAPNLPDLNRSQVYAVRHALQRPLSLIQGP
PGTGKTVTSATIVYQLAKLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCARSREAID
SPVSYLALHNQIRNMAQNTELKKLQQLKDETGELSLSDERRYRSLKKQAERELLEAADVI
CCTCVGAGDPRLQRLKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCK
KAAKAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERKLK
VDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGIKPEQIGIIT
PYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGFLN
DPRRLNVALTRAKYGIIIVGNPKVLSKQELWNHLLNFYKDKKVLVEGSLNNLKESMIQFT
KPKKLVNTLNPGSHFMNNVMYDAKEVLGAGGFFDRTASSVSAGFGNHSLTAGFGGGIQSF
HQLHAGGGGGGGLMDMGSGQGLGSTGSGGGVGGGTLGNSAAMPPDAFIRKMHDPIGYISP
HRAHQAVNNMPVPVGMFINMSNIPPRFYQQQQAIQAAKQIRRPTAAGGPRGADQLQGSGS
GTSAVGTGPSSSKSSNRPRPIGPPSQLGHVGGGSLTQGMSQGMSQPGFSLSQQPGLSQDY
LGEYQSQMDNILSQDSHYNSQNGPGDRLVFDLPSDSKFPEPY
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggatgccttcgatgggacgagcggttcgctaacgttcgtcgatacggaggag
aactttttcgtcggtgcggactcgcaaggttcggactttgatttccgcgactttacgctc
ccgtcgcagagccagacgcaagcgtcgcaacatgatcatctgggagggggcagccaggta
aatggtttcgggcgtcggattggtgtggatccgtcgaagctgtccagcatcacctcggcg
atcggcgagctgcagttcgaggaagatgaggacgaaacggagccggtagaaaacaagcag
ttaccggcccatgcctgtcgctactgtggaattcacgagccgagcaccgtggtcatgtgt
aacatttgcaaaaagtggttctgcaatgggcgcggcaatacttccgggtcccacatcgtg
aatcatctggtgcgcgccaagcaccgagaggttacgctgcatgccgacggaccgctcgga
gagacggtgctcgagtgttactcgtgcgccacgaggaacgtgtttttgctggggtttatt
ccggccagaagtgattcggtggtggtgctgttgtgcagacaaccgtgtgctgcgcagaac
tccatcaaggatatgaactgggatcaggagcagtggaaaccgctgatcgccgatcgttgc
tttctgttttggctggtgaaagtaccgtccgatcaggagcagatgcgcgcacggcaagtt
tccgccgcgcaaatcaacaagctggaggagctgtggaaggaaaacgttgatgcaacattt
caggatttggagaaaccgggcatcgacaaggaaccgcagccagtgcagctgcgctacgtg
gacggttaccagtaccagaacacgttcggtccgcttataaagctggaggccgattacgac
gagaagctgaaggaaagccaaacgcaggagaacatcgagatacgctgggacaccgggttg
aacaagaaaacgattgcctacttcacgctggccaagaacgatggcgacatgaagctgatg
catggtgacgagctgaagcttcggtacgtcggcgagatgcataagccgtggagttgcctc
ggccatgtcatcaaggttccggacaactacggtgatgatgtagggctcgagttgaaacac
aatcatcaggcaccggtcgagtgtacggtcaactttgcagtggatttcatctggaagggc
acatcattcgagcgtatgcagcaggccttgcgcaagtttgcgatggacgcgaagagcgtg
tccaactacatctactcgcggctgctaggcaacgtgcgtgctgatggcaatgaggaagtg
ctgttccggttcacgctacccaagcacttcagtgctccgaacctgccggatctgaatcga
tcccaggtgtacgcggttcggcatgcgctacagcggccgcttagcttgattcagggacca
ccgggaacgggcaaaacggtgacctccgctacgatcgtgtatcagctggcgaagctgaac
agtggccccatcttggtgtgcgccccgagtaacacggcggtcgatcaactgacggagaaa
atccaccgcaccaacctgaaagtggtgcgcgtttgtgcacgatcgcgagaagctatcgat
tcgccggttagctaccttgccctgcacaaccaaattcgtaatatggcccagaacacggag
ctgaagaagctgcagcagctgaaggatgaaaccggcgagctgagtctttccgatgagcga
cgctatcgatcgctgaaaaagcaggccgaacgggagctgctcgaagcggccgacgttatc
tgctgtacgtgcgtcggtgctggggatccacggctgcagcgcctcaagttcaactccatt
ctgatcgatgaatcgatgcaatcgacggagccggaatgcatggtcccggtcgtgctaggg
gccaagcagcttatactggtcggtgatcactgccagctggggcccgttgtaatgtgcaag
aaggccgccaaggccgggctgtcgcagagtttgttcgagcggttggtggcgctaggtatt
cgtccgttccggttggaggtgcagtaccgtatgcacccggagctatcacagttcccgtcc
aatttcttctacgaaggcagcctgcagaatggggtgtgtgcggatgagcggaagctgaag
gtggactttccctggccatcgcccgattgtcccatgtttttcctcgtaacgcagggccag
gaggagatagctggctccggtacttcctacctgaaccgtaccgaggcgtcgaacgtggag
aagataacgactcgcttcctgaaggcgggcatcaagccggaacagatcggtatcatcacg
ccgtatgagggacagcgcgcttacctggtgcagtacatgcagtaccagggctccctgcac
tcgaagctctaccaggagatcgagattgccagcgtggacgcgttccagggtcgggagaag
gacattatcatcatgtcgtgtgtgcgagccaacgagcaccagggcatcggttttctgaac
gatccgagacgtctcaatgtggcgcttacccgggccaagtatggcattattatcgttgga
aacccgaaggtgctgtcgaagcaggaactgtggaaccatctgctgaacttttacaaggac
aagaaggtcctggtggagggttcgctgaacaacctgaaggaatcgatgatacagttcacg
aagccgaaaaagctcgtcaatacgctcaaccccggctcacatttcatgaacaatgtcatg
tacgacgcgaaggaggtactcggagctggaggattcttcgatcgcacggcttcctcggtc
tcggcgggcttcggtaatcactcgcttacggctggctttggtggtggcattcaatccttc
catcagctgcatgccggtggtggtggtggtggtggtctaatggacatgggcagcggccag
ggactcggttcgaccgggagtggaggtggtgttggtggtggtacgcttggtaattcggcc
gccatgccaccggacgcattcatacgcaagatgcacgacccgatcggttacatttcgccg
catcgtgcccaccaagcggtcaacaatatgccggtaccggtgggcatgttcatcaacatg
tccaacataccgccccgattctaccagcagcagcaagcgattcaggcggccaaacagatc
cgtcgtccaacggcagccggcggtccacgtggtgccgatcagttgcagggaagtggtagt
ggcacgagcgccgtcggtaccggtccatcgagcagcaaatcatctaaccgtccccgtccg
atcggtccaccgagtcagctcggacatgttggtggcggttcgctgacgcaaggcatgtcg
caaggcatgtcacagccgggattcagcctttcgcagcaacccggcctctcgcaggactac
ctgggcgagtatcagtcgcagatggacaacattctgtcgcaggactcgcactacaacagc
cagaacgggcccggtgaccggttggtgttcgatctgccatcggattcaaagttcccggaa
ccgtactga
DBGET
integrated database retrieval system
