Abyssibius alkaniclasticus: LGT41_0003215
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Entry
LGT41_0003215 CDS
T08825
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03030
DNA replication
aalk03410
Base excision repair
aalk03420
Nucleotide excision repair
aalk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT41_0003215 (polA)
03410 Base excision repair
LGT41_0003215 (polA)
03420 Nucleotide excision repair
LGT41_0003215 (polA)
03440 Homologous recombination
LGT41_0003215 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aalk03032
]
LGT41_0003215 (polA)
03400 DNA repair and recombination proteins [BR:
aalk03400
]
LGT41_0003215 (polA)
Enzymes [BR:
aalk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGT41_0003215 (polA)
DNA replication proteins [BR:
aalk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGT41_0003215 (polA)
DNA repair and recombination proteins [BR:
aalk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LGT41_0003215 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGT41_0003215 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
UPH71843
LinkDB
All DBs
Position
603796..606615
Genome browser
AA seq
939 aa
AA seq
DB search
MAFGKGHHLHLIDGSAYIFRAYHALPPLTRASDGLPVGAVSGYCNMIYKLVEDAKGPDAP
THVAVIFDHSGTTFRNTIYDQYKAQRPPAPEDLKPQFALIRQATRAFNLPCIEMEGFEAD
DLIATYARQAREAGGRVTIVSSDKDLMQLVGGGIEMLDPMKNKRIGPDEVFEKFGVDPAR
VIDVQSLAGDSVDNIPGAPGIGIKTAALLIQEYGDLDSLLERAGEIKQPKRRETLIEKAD
QIRMSRKLVTLKQDVETVETLDDFDVKDPVPSEVLAFMAEMEFRTLAERMAAKLKVDPPT
IAAKPGPDISASGSTPGNDAPADATPIVANRYETVADAEALQKWIDAAYRRGWVAFDTET
TGLDEMVADLVGISLAVEPGEACYIPLTHREGEGDLLGASTMAEGQMPLKDALARLKPML
EDASILKIGQNIKYDLKIMARYGVDLAPIEDTMLMSYALHAGLHNHGMDALSERYLSHKP
IAIKSLLGTGKSAKTFDQVPIAEATPYAAEDADITLRLWKTFKPRLASAGVTRVYETMER
PLVPVLAQMERHGILVDRDHLSRMSNSFAQKMAQLEDEIHGLAGGRFNVASPKQLGEILF
DQMGLAGGKKGKTDAYSTGADVLEDLAAEGHELPARVLDWRQMAKLKSTYTDALQTHINA
ETGRVHTSYSIAGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAAPGNVLVSLDYSQIE
LRILAHIAEIDSLRQAFADGHDIHAMTASQMFNVPIEGMDPAIRRQAKAINFGVIYGISG
FGLARNLRIPRAEAQAFIDTYFERFPGIREYMDSTVEFGKAHGYVQTLFGRKIHTPEIGA
KGPQAGFAKRAAINAPIQGTAADIIRRAMIRMPEAIAKLPARMLLQVHDELLFEVEESAV
DDTIAAARRVMEGANLPAVDLAVKMTVESGQGPNWAAAH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttggcaagggccatcatctgcatctgatcgacggctcggcctatatttttcgt
gcctatcacgccctgcccccgctgacccgcgcctccgatggtctgccggttggcgcggta
tcgggctattgcaacatgatctacaagctggtggaagacgccaagggccccgatgcaccc
acccatgtggcggtgatattcgaccattccggcacgacattccgcaacaccatctatgac
caatacaaggcccagcgcccgcccgcgcccgaagacctgaagccgcaattcgcgctcatc
cgccaggcgacccgcgccttcaacctgccctgcatcgaaatggaggggttcgaggccgat
gacctgatcgccacctatgcccgccaggcgcgcgaagccggcgggcgggtaacgattgta
tcctcggataaagacctgatgcagcttgtcggtggcggcattgaaatgctcgacccgatg
aagaacaagcgcatcggccccgatgaggttttcgagaaattcggtgtcgacccggcccgc
gtgatcgatgtgcaaagccttgcgggcgatagcgtagacaatatccccggcgcgcccggt
atcggcatcaaaaccgccgctttgcttattcaggaatatggcgatctggacagcttgctg
gaacgcgcgggcgagatcaaacagccaaaacgccgcgaaacgctgatcgagaaggccgac
cagatccgcatgagccgcaaattggtaacgctgaagcaggatgttgaaaccgtcgaaacg
cttgacgattttgacgtgaaagacccggtgccaagcgaggttctggcctttatggcggaa
atggagttccgcactctggccgagcgcatggccgccaagctcaaggttgacccgccgacc
attgccgccaagcccggccccgacatttcggccagcggcagcacgcccggcaatgatgca
cccgccgatgccacgccgatcgtggccaatcgctacgagactgtggccgatgccgaagcc
ttgcaaaaatggatcgatgccgcctatcgccgtggctgggtggcgtttgataccgaaacc
accgggctggatgaaatggtcgccgatctggtgggcatttcactggccgtcgagccgggc
gaggcctgctatattccgctaacccatcgtgagggtgagggcgatctgcttggcgcctcg
acaatggccgaagggcaaatgccgctgaaggatgcgctggcccggctcaaacccatgctg
gaagatgcgagcattctgaaaatcggccagaacatcaagtatgacctgaagatcatggcg
cgctatggcgttgatctggccccgatcgaggatacgatgctgatgtcctatgcgcttcat
gccgggctgcacaatcatggcatggatgcgctcagcgagcggtatctgagccataagccg
atcgcgatcaaatcgctgcttggcacgggcaaatcggcaaaaaccttcgatcaggtgccc
atagccgaggctacaccctatgcggcggaagatgccgacattacgctgcggctgtggaaa
accttcaaaccacggctggcaagcgccggtgtgaccagggtttatgaaacgatggaacgc
ccgcttgtgcctgttctggcacagatggagcggcacgggatcttggtggatcgtgaccat
ctcagccgtatgtcaaacagtttcgcgcagaaaatggcgcagctggaggacgagattcac
gggcttgccggtggcaggttcaatgtcgccagccccaagcagttgggcgagattctgttc
gaccagatgggccttgccggtggcaagaaaggcaagaccgatgcctattcgaccggcgcc
gatgtgctggaagacctggccgccgagggccacgagctgcccgcccgcgtgctggactgg
cggcagatggccaagctgaaaagcacctataccgacgcgctgcaaacccatatcaacgcc
gaaacggggcgcgttcataccagctattccattgcgggcgccaataccgggcgcctggcc
tcgaccgacccgaacctgcaaaacattcccgtgcgcactgaggaaggccgccgcattcgc
gaagcctttgtcgccgcccccggcaatgtgctggtgagtctagattacagccagatcgag
ctgcggattctggcgcatatcgccgagattgacagtttgcgccaggcctttgccgatggt
cacgacattcacgccatgacagccagccagatgttcaacgtgccgatcgaggggatggac
ccggccattcgccgccaggccaaggccatcaactttggggttatctacggcatttccggc
tttggccttgcgcgcaatctgcgcattccgcgcgccgaggcacaggcctttatcgacacc
tatttcgaacgcttccccggcattcgggaatatatggacagcacggtcgaattcggcaag
gcgcatggctatgtgcaaacgctgttcgggcgcaagatccatacaccggaaatcggtgcc
aaaggcccgcaggcgggctttgccaagcgcgccgccatcaacgcccccattcagggcacg
gcggccgatatcatccgccgcgcaatgatccggatgcccgaagccattgccaaactgccc
gccagaatgttgctacaggtgcatgatgaactgctgttcgaggtggaagaaagcgccgtt
gacgacaccattgccgccgcgcgccgcgtcatggaaggcgcaaacctgccggctgttgat
ctggcggtaaaaatgaccgtggagtctggccaggggccgaactgggcggcggcgcattag
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