Abyssibius alkaniclasticus: LGT41_0004555
Help
Entry
LGT41_0004555 CDS
T08825
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
aalk
Abyssibius alkaniclasticus
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aalk03400
]
LGT41_0004555 (addA)
Enzymes [BR:
aalk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGT41_0004555 (addA)
DNA repair and recombination proteins [BR:
aalk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LGT41_0004555 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UPH72099
LinkDB
All DBs
Position
complement(883460..886765)
Genome browser
AA seq
1101 aa
AA seq
DB search
MTTPEIDRATKAQHAAARPDISSWITANAGSGKTSVLINRVARILLGGTPPARILCLTYT
KAAAAEMQNRLFTQLGAWSMLPDSALRKALGKLGAGMVDAAALIEARRLFARALETPGGL
KIQTIHAFCESLLRRFPLEAGLSPSFELLDDRAAELLRRDIRDEMAIGDDLPLLDAMLAQ
SGQVDEVTKEILKHQDAFAQKPNRAALAKALGIAPDLSATSILSTAMQDFSDSDINAIAS
ILAKGTKTEQNAAAMLGLRSSDPAEAALAAFISGFLTKAGTPYKTGLPGAETKKMPDAAS
RVETLVARAEAASQALNALNALERGLTLHRFARAFLARYRAAKARRQRLEFDDLIRHASA
LLHQSDMAAWVLYRLDGGIDHILIDEAQDTSLAQWRIFETLAEEIMAGLGAAPERARTLF
VVGDIKQSIFSFQGADPAAFSTMQTHLAARLAARETPMQETSLRHSFRSATPILALVDAV
AAPVEAGLGGPSAHAPAYPDLPGRIDIHPFVKAEDKPETAPLFEFTLTPPHPDPERLLAE
KIADDIATMIATKTLLPAKNRPVRAGDFLILVQRRKVLYKTLIRALKARGVAVAGADRLT
LGEDLAVADVIMALKFAACPEDDLALATVLRSPLIGWTESQLFTLAHRRSGGLWPALHAQ
GAPKMLADLLARADFQRPYELIELILQKHNGRSNLLARLGSECEDALDELLVQALAYEAA
DIPTLGGFLEWFESGDTEIKRQVDKASDQLRVMSVHGAKGLESPIVILPDTAKLDLANSP
NIITLGDQAVAWGKSADVNPPVVQVAVAASREAEMHERQRLLYVAMTRAESWLIVYGAGA
RGTAEKPCWYDQIATAARAMPGAEIDGEAITLRHNWAAAGATSDAPTAPDAAPEPPAWFT
TAAATPPRPASRLSPSQLGGAHALPGADGLMADEALAYGTALHALLEQIIALDPEARAEA
IAALRPEIGMEAEAAQLLISPDMRKLLEAAPLAEVAFACHIKDLGDISGRIDLLEISEST
VTAYDFKTNRNLPARPEDTPEALLRQMASYRAALAQIYPTRKIETAIIWTKTAQIMPLGH
AITDAALMRAVADARVVASAP
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaccggaaatcgaccgcgccacaaaagcccaacacgccgccgcccgccccgat
atctcaagctggatcaccgccaatgccggctccggcaaaacctcggtgctgatcaaccgc
gtggcgcgcattctgctgggcggcaccccgcccgcgcgcatcctgtgcctcacctatacc
aaggccgctgccgccgaaatgcagaaccggctgttcacgcagcttggcgcatggtcgatg
ctgcccgattccgccctgcgcaaggcgctcggcaaacttggcgccggcatggtcgacgcc
gccgccctcatcgaggcccgccgcctgtttgcccgcgcgctcgaaacccccggcgggctg
aagatccagaccatccacgccttttgcgaatcgcttctgcgccgttttccgctggaagcc
gggctgtcacccagtttcgaactgcttgatgaccgcgccgccgaactgctccgccgcgat
atccgcgatgaaatggccataggcgatgacctgcccctgctcgacgccatgctcgcccaa
tccgggcaggtcgacgaggtgacaaaggaaatcctcaaacatcaggatgcgttcgcgcag
aagccaaaccgcgcagcactggccaaagcccttggcattgcacccgatctgagcgccacc
tccatcctctccaccgcgatgcaagatttttccgatagcgatatcaacgccattgccagc
atcctcgccaagggcacgaaaaccgagcagaacgccgccgccatgcttggcctgcgcagc
agcgaccctgccgaagccgcgcttgccgccttcatttccggctttcttaccaaggcgggc
acaccctataaaaccggccttccgggggctgaaaccaagaaaatgcccgatgccgccagc
cgcgttgaaaccctcgttgcccgcgccgaagcggccagccaagcgctcaacgccctcaac
gcgctggaacgcggccttacgctgcaccgctttgcccgcgcattccttgcccgttaccgc
gccgccaaagcccgacgccagcggctggagtttgatgacctcatccgccacgccagcgcg
ctgctgcaccaatccgacatggcggcttgggtgctttaccggctcgatggcggcatcgac
catatcctgattgacgaggcgcaggacacaagccttgcgcaatggcgcatttttgaaaca
ttggccgaagagatcatggccgggctgggtgctgcgcccgaacgcgcgcgcacgctgttt
gtggtgggcgatatcaagcaatccatcttctccttccaaggggccgacccggcggccttt
tcaaccatgcaaacgcatctggccgcacggctggcggcgcgtgaaaccccgatgcaggaa
accagcctgcgccattccttccgctcggccacgccgattctggcgctggtcgatgcggtt
gcagcccctgttgaagccgggcttggtggcccctcggcccatgcgcccgcctatcccgac
ctgcccggccggatcgacatccacccctttgtaaaggccgaagacaagcccgaaaccgcc
ccgctattcgagttcaccctcaccccgccccatccggacccggagcgtttgctggccgag
aaaatcgccgatgacatcgctacgatgatcgccacaaaaaccctgctgcccgccaagaac
cgccccgtgcgggcgggcgattttctgattctggtgcagcggcgcaaggtgctttacaaa
accctgatccgcgcgctcaaggctcgcggtgttgccgtggccggggccgacaggctgacc
ctgggtgaagacctggccgtggccgatgttatcatggcactgaaattcgccgcttgcccc
gaggatgatctggcgcttgccaccgtgctgcgctcgccgctcatcggctggaccgagtcg
cagcttttcacccttgcgcataggcgcagcggcgggttgtggcccgcgctgcacgcccaa
ggcgcgcccaaaatgctggccgacctgctggcacgggccgatttccagcgcccttacgag
ctgatcgagcttatcctgcaaaagcataatggccgcagcaatctgctcgcccgtttgggc
agcgaatgcgaagatgcgctcgacgaattgctcgtgcaggcgctggcatacgaggcggct
gacattcccacgctgggcgggtttcttgaatggttcgaaagcggcgataccgagatcaag
cgccaggttgacaaggccagcgaccagttgcgcgtgatgagcgtgcatggcgccaagggg
ctggaatcgcccatcgttatcctgcccgatacggctaagctcgatctcgccaacagcccc
aacatcatcacgctcggcgatcaggctgtggcatggggcaagtcagccgatgtaaaccct
cctgtcgtgcaggttgcggttgcggccagccgcgaggctgaaatgcatgaacgccagcgc
ctgctttatgtcgccatgacccgcgccgaaagctggctcatcgtctatggcgcaggcgcg
cgcggcaccgctgaaaagccgtgctggtatgaccagattgcgacagccgcgcgcgcgatg
ccgggcgcggaaattgatggcgaagccatcaccctgcgccataactgggctgcagcgggt
gcgaccagcgacgcgcccaccgcgccagacgccgcgcccgaaccgcccgcatggttcacc
accgctgccgccacgcccccgcgccccgccagtcggctttcaccctcacagctcggcggc
gcccatgccctgcccggcgccgatgggctgatggccgacgaggcgctggcctatggcacg
gccctgcacgcattgctggaacagatcatcgcgctcgaccccgaagcgcgggcagaggcc
attgccgcgctgcgccctgaaatcggcatggaggccgaagccgcacagcttctgatcagc
cccgacatgcgcaagctgctggaggcggccccgctggccgaggttgcattcgcgtgtcat
atcaaagatttgggcgatatttccggccgcatcgacctgctggaaatcagcgagtccacc
gtcaccgcctatgatttcaagaccaaccgcaacctgcccgcccgccccgaggatacgccc
gaagccctgctgcggcagatggccagctaccgcgcggcgcttgcgcaaatctaccccaca
cgtaaaattgagacggcgattatctggacaaaaaccgcacaaatcatgccacttggccac
gccatcaccgatgccgccctcatgcgcgctgtggcagatgcccgggttgtcgccagcgcg
ccttga
DBGET
integrated database retrieval system
