Abyssibius alkaniclasticus: LGT41_0007545
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Entry
LGT41_0007545 CDS
T08825
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03030
DNA replication
aalk03430
Mismatch repair
aalk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGT41_0007545 (dnaE)
03430 Mismatch repair
LGT41_0007545 (dnaE)
03440 Homologous recombination
LGT41_0007545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aalk03032
]
LGT41_0007545 (dnaE)
03400 DNA repair and recombination proteins [BR:
aalk03400
]
LGT41_0007545 (dnaE)
Enzymes [BR:
aalk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGT41_0007545 (dnaE)
DNA replication proteins [BR:
aalk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LGT41_0007545 (dnaE)
DNA repair and recombination proteins [BR:
aalk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LGT41_0007545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF7398
Motif
Other DBs
NCBI-ProteinID:
UPH72655
LinkDB
All DBs
Position
1497278..1500721
Genome browser
AA seq
1147 aa
AA seq
DB search
MNSPRFIHLRTHSAYSLLEGAVDLKRLIALAKAADMPAIAVTDTGNMFGALEFSEYAAKA
GLQPIIGCQLALSYAPPARQGEAPPPARPIVLLAQNEAGYNNLMKLNSHNFLDCGDALPH
VTMQHLEAHSEGLIALSGGAEGPLGYLCAEGQAEAARALAKHLAKIYPGRLYIEIQRHPD
GDAPRMAREAASEPGLIGLAYALELPLVATNEVFFPEPDFYAAHDALICIAEGAYVDQQT
PRRHLTPAHYFKSQDEMVKLFTDLPEAVENTVEIARRCGFRVRTRAPILPKFADDEVVEL
RRAAHEGLAERLKVIPHAAEVADYEARLDFELGVIEQMGFPGYFLIVADFIKWAKAQNIP
VGPGRGSGAGSLVAYSLTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRY
VQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYMQVDRLSKLIPVEGVKPVSIHKAL
QDEPRLREEARSEEVVARMLDYAGRVEGLLRNASTHAAGVVIGDRPLDELVPLYRDPRSD
MPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNALDLLKQRGVAVDIGLIPLDDAKTYELY
AAARTVAVFQVESAGMMDALRQMKPTCIEDIVALVALYRPGPMENIPKFCKVKNGLEKRD
NLHESIDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIAEEMAKERPKF
IEGAKKNNVTEKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMAGVM
NCDLHLTEKLAVYKQEVDRLEIEIIPPCVNRSGATFGVEDGKIVYALGALKNVGVEAMKL
IVAARADGSFKDLLDFARRVDLKRVGKRPLEMLARAGAFDQLDSNRARVLASLDTLVAYA
SATHEARASAQVSLFGEAGEDLPAPRLPTAEDWLATERLGQEHQAVGFYLSGHPLDDYMG
PLKRQRPPVLTLVELHAQTARTGASIGKIAGTVSSIQSRKSSRGNRFAFVALSDPSGMYE
VTVFSDTLEAAGELLSPGQNVVLAVEAEVQGDNLKLLARKVQAIDSAIAGVASAGLRVFV
NEEDAFSMVAGILERGGPGSRGPVNLVLTHPDLPGEVEIMLKGDYAVSPQIKGAIRSTPG
VVTVEEF
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcccccgattcatccatctgcgcacccatagtgcctattccctgctggaaggt
gcggttgatctgaagcggctgatcgcgcttgccaaagccgccgacatgcccgcgattgcc
gtgaccgataccggcaatatgtttggtgcgctcgaattttcggaatatgccgcaaaggcg
ggtttgcagccgatcatcggttgccagttggcgctttcctatgcgccgcccgcgcgccag
ggcgaagcaccgccaccggcccgcccgattgtgctgctcgcgcagaacgaggcgggctat
aacaaccttatgaagctgaattcacacaattttctggattgtggcgatgcgctgccgcat
gtgacgatgcagcatctggaggcgcattccgaagggctgatcgcgctttcgggcggggcg
gaaggcccgcttggctatttgtgcgccgaggggcaggcggaggccgcgcgcgccctggcc
aagcatcttgcaaagatttaccccggcaggctttacattgaaatccagcgccaccccgat
ggcgatgcaccgcgcatggcgcgcgaagcggccagcgaaccggggttgatcggcctggcc
tatgcgctggaattgccgttggtggccaccaatgaggtgttcttccccgaacctgatttc
tacgccgcccatgatgcgctgatctgcattgccgaaggcgcctatgttgaccagcaaacg
ccgcgccgccacctgacgccagcccattacttcaagtcgcaggacgaaatggttaagctc
tttaccgacctgccggaagcggtggaaaatacggtagagattgcgcggcgttgcggcttt
cgggtgcgcacacgcgcgccgattctgccaaaattcgccgatgacgaggtggtggaactg
cgccgcgccgcccatgaagggctggcggagcggctgaaggtaatcccccatgcggccgag
gttgcggattacgaggcgcgactcgatttcgagctgggtgtgatcgagcaaatgggcttt
cccggctattttctgatcgtggccgatttcatcaaatgggccaaggcgcagaacattccc
gtggggccggggcgtggttcgggggcaggctcgcttgttgcttattcgctgacaattacc
gaccttgacccgctgcgctattcccttctttttgaacggtttttgaaccccgaacgcgtg
tcgatgcccgattttgacatcgacttctgcatggatcgccgcgaggaggtgatccgctat
gtgcaagagaaatatggccgcgacaaggtggggcagatcattacctttggcgcgcttctg
tccaaggcggcggtgcgcgacatcggccgcgttttgcaaatgccctatatgcaggtggac
cggctgagcaagctgatcccggttgagggtgtaaagcctgtcagcatccacaaggcgctg
caggacgagccgcgcctgcgcgaggaagcccgaagcgaagaggttgtggcgcggatgctc
gactatgcgggccgggtcgaggggctgttgcgcaatgcctcaacccatgccgccggtgtg
gtgattggtgaccgtccgctggacgagctggtgccgctgtatcgcgacccccgctcggac
atgcccgcaacacagtttaatatgaaatgggttgagcaggccgggctggtgaagttcgac
tttctgggcctgaagaccctgacagtcattcagaacgcgctcgatttgctgaaacagcgc
ggcgtggcggtggatattggccttattccgctggatgacgccaagacctacgagctttat
gccgctgcgcgcaccgtggccgtgtttcaggtggaatcggcgggcatgatggatgcgctg
cgccagatgaagccgacctgcatcgaggatattgtggcgctggtcgcgctgtatcggccc
ggcccgatggagaatattccgaaattctgcaaggttaagaacgggttggaaaagcgcgac
aacctgcacgagagcattgaccatattctggacgaaacgcagggcattattgtttaccag
gaacaggtgatgcagattgcccaggaaatggccggctattcgctgggtggcgctgatttg
ctgcgccgcgcgatgggtaagaaaatcgccgaggaaatggccaaggaacggcccaaattc
atcgaaggcgccaagaagaacaacgtcacagagaagaaggccagcgaggtttttgacctg
ctggagaagttcgcgaattacggtttcaacaaatcacacgcggcggcctatgcggtggtt
agctatcaaacggcttggctgaaggcgaattatccggtcgagttcatggccggggtgatg
aactgcgatttgcacctgaccgaaaaattagccgtgtataaacaagaggttgaccggctc
gagatcgagatcatcccgccttgcgtgaaccgttcgggcgcgacctttggtgttgaggat
ggcaaaatcgtctatgcgctgggcgcgctgaaaaacgtgggcgttgaagcgatgaagctg
attgtcgccgcccgtgccgatggatcgttcaaggatttactggattttgcccgtcgcgtg
gatttgaagcgcgtgggcaagcgcccactggaaatgttggcgcgggcaggtgcgtttgat
cagctcgattccaaccgcgcgcgggtcttggccagtcttgacactctggttgcctatgcg
agcgccacgcatgaggcgcgcgccagtgcgcaagtcagcctgtttggcgaggcgggtgaa
gatttgccagcgccgcgcctgcccacggccgaggactggttagccactgaacggttgggg
caggagcatcaggcggttgggttctatctgtcgggccatccgctcgatgattatatgggg
ccgctgaaacgccagcgcccgccggtgctgacgcttgtggagcttcatgcgcaaaccgcg
cgcacgggggcaagcattggcaagattgccggcacggtttccagcatacaaagccgaaaa
tcatcgcgcgggaaccgctttgcctttgtggcgctgtccgatccgagcgggatgtatgag
gtgacggtgttttccgacacgctggaagctgcgggcgaattgctgagccctggccagaat
gtggtgctggcggtcgaggcagaagtgcagggcgacaacctcaaactgctggcgcgcaag
gttcaggcgattgacagcgccattgccggtgtcgccagcgccgggctgcgggttttcgtg
aatgaagaagacgcgttttcaatggtggccggcattctggagcgcggcgggccggggtcg
cgcgggccggtcaacctggtgctgacccatccagacctgccgggcgaggtggagatcatg
ctgaagggcgattacgccgtctcaccgcagatcaagggtgccatacgctccacacccggt
gttgtgacggtggaggagttttga
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