Abyssibius alkaniclasticus: LGT41_0008270
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Entry
LGT41_0008270 CDS
T08825
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT41_0008270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalk03019
]
LGT41_0008270
03009 Ribosome biogenesis [BR:
aalk03009
]
LGT41_0008270
Enzymes [BR:
aalk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGT41_0008270
Messenger RNA biogenesis [BR:
aalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGT41_0008270
Ribosome biogenesis [BR:
aalk03009
]
Prokaryotic type
rRNA helicases
LGT41_0008270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPH69820
LinkDB
All DBs
Position
complement(1660228..1662045)
Genome browser
AA seq
605 aa
AA seq
DB search
MSEFEGVHPALASALAGRGYEILTPVQKAVIASDLGQADALVSAQTGSGKTVAFGLALAE
GILGDAEKFAPAERPLALIIAPTRELAMQVKAELMWLYAGTGARFASCVGGMDSRSERKM
LQFGAHIVVGTPGRLRDHIEKGALDLGALKAAVLDEADEMLDLGFREDLEFILDSAPNSR
RTLMFSATVSKPIAALAKTYQRDAVRISTVSDSKQHLDIDYRAVSVAKGDKEHAIINLLR
YYDATNALVFCATRATVNHLMARFNNRGFRVVALSGELSQAERTHALQAMRDGRANVCIA
TDVAARGIDLPNLELVIHADLPTNRETLLHRSGRTGRAGRKGVSALIVQGHEKRKAERVF
GFASVKPTWVSAPSADEINKRDDERLMDHPLLAEPLREEDQAMISALLEKHGAETLAAAF
VRMNRDAKSAPEDVVAVAPGATAAPTPRDEFEQSVWIVASTGRNSGAEPRALLPMVCKAG
DITRRDVGAIRLQDDESFIQLNAKIADKFMANVGPDNMIGAGIRIARLPGAPEFTPRGRG
TTEAPKSKYKADKPYKPGGKPGGKPGGKPWAKKGGDKPFRKGPSAAPSAGPGAKPFKRKA
KPKTD
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatttgaaggcgtgcatccggcgctggcatcggcattggccggccgcggatat
gagatcctgacccccgtgcagaaggcggtcatcgcctcggaccttggccaggccgatgcg
ctggtctcggcgcaaaccggctcgggcaaaaccgtggcctttggccttgcgctggccgaa
ggcattttgggcgatgcagaaaaattcgcccccgccgagcgcccgttggcgctgatcatc
gcgccgacccgcgagcttgccatgcaggtgaaggccgagttgatgtggctttacgccggc
accggcgcgcgctttgcaagctgcgttggcggcatggacagccggagcgagcgtaaaatg
ctgcaattcggcgcgcatatcgttgtgggcacgccgggccgcttgcgcgaccatatcgaa
aaaggcgcgctcgatcttggcgctttgaaggcggccgtgctggatgaggccgatgaaatg
ctcgacctcggttttcgcgaagaccttgagttcatcctcgactctgcccccaattcgcgc
cgcacgctgatgttttcggccaccgtctccaagccgattgccgcgctggccaaaacctac
cagcgcgatgccgtgcgcatttccaccgtctccgacagcaagcagcatctggatatcgac
taccgcgccgtttcggtcgccaagggcgacaaggaacacgccatcatcaacctgctgcgc
tattacgacgcgacaaacgcgctggtcttctgcgccacgcgcgccacggtcaaccacctg
atggcgcgcttcaacaaccgtggcttccgcgttgtggccttatcaggcgagcttagccag
gccgagcgcacccacgccctgcaagccatgcgcgacgggcgcgccaatgtctgcattgcc
accgatgtggcggcgcgcggcatcgacctgcccaatctcgaactggtcatccatgccgac
ctgcccaccaaccgcgaaaccctgctgcaccggtccggccgcacgggccgcgccgggcgc
aagggcgtttcggcgcttatcgtgcagggccatgaaaagcgcaaagccgagcgtgtgttc
ggcttcgcctcggtcaagccgacatgggtgagcgcccccagtgccgatgagatcaacaag
cgcgatgacgaacgcctgatggaccaccccctgctggccgaacccctgcgcgaggaagat
caggcgatgatcagcgcgttgcttgaaaagcacggcgcagaaacgctggccgccgccttt
gtgcgcatgaaccgcgatgcaaaatcggcccccgaagatgtggttgcggtagcgcccggt
gccaccgccgcccccaccccgcgcgacgagtttgagcaatcggtctggatcgttgcttcg
acaggccgcaacagcggtgccgagccgcgcgcgctgctaccgatggtgtgcaaggcaggc
gatattacgcggcgcgacgttggcgccatccgcctgcaggatgatgaaagcttcatccag
ctcaacgcaaaaatcgccgataagttcatggccaatgtcggccccgacaatatgatcggt
gccggtatccgcattgcccgcctgcccggcgcgcccgaattcaccccgcgcggccgtggc
acgaccgaggcgcccaagtcgaaatacaaggccgacaagccctataagcccggtggcaag
cccgggggcaagccaggcggcaagccctgggccaaaaagggcggtgacaagccgttcagg
aaaggcccatctgccgcaccgagtgccgggccgggcgccaaacccttcaagcgcaaggca
aagccgaagaccgactag
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