Abyssibius alkaniclasticus: LGT41_0012805
Help
Entry
LGT41_0012805 CDS
T08825
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT41_0012805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalk03019
]
LGT41_0012805
03009 Ribosome biogenesis [BR:
aalk03009
]
LGT41_0012805
Enzymes [BR:
aalk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LGT41_0012805
Messenger RNA biogenesis [BR:
aalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGT41_0012805
Ribosome biogenesis [BR:
aalk03009
]
Prokaryotic type
rRNA processing factors
LGT41_0012805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
SLFN_AlbA_2
Motif
Other DBs
NCBI-ProteinID:
UPH70663
LinkDB
All DBs
Position
2573827..2576445
Genome browser
AA seq
872 aa
AA seq
DB search
MSKKMLIDATHAEETRVVVVDGNKVEDFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEVHPDYYQIPQADRKALLEEEARAAREVESEEEEKPKPRSRTRRRGGK
KRDEAQQADAQQNETADSDEGAAQGDAGDVNATQPLEDGAPAQADETVSEPADIDADAGT
GLVDSDDDGNGDEDGDDHPQLVETPEGRNRRRKPAQKRGDSEQADDEYETVGADDVAEEV
APRRAPRHRRYKIQEVIKVRQIMLIQVVKEERGNKGAAVTTYLSLAGRYCVLMPNTARGG
GISRKITNISDRKKLKEIAAEIQVPNGAGLIIRTAGSQRTKAEIKRDYEYLLRQWEQIRD
LTLKSMAPAPIYEEGSLIKRSIRDLYNRDIDEIWVDGEEGYREAKDYMKMLMPSHAKNVK
RYDESLPLFARYQVENYLSAMFNPTVQLKSGGYIVIGITEALVAIDVNSGRSTREGSIEE
TALKTNLEAAEEVAHQLKLRDLAGLIVIDFIDMEDRRNNLAVEKKMKDKLKNDRARIQVG
RISGFGLMEMSRQRLRPGMIEATTQPCPHCHGTGITRSNDSMALAILRELEEEGVRKRAR
EVLVTAPVEVANYLLNAKREHVTTVETRFGLSVRIEADASLISPEYRVERFKTTTRPVVE
VETVSFTSVAAPDVEEDRSADEAQAAPAPVPADPDDDAPRKKRRRRRRRGGKGRNGEDGS
NEAEASVAADGEKAADPAPEAEPAPQDDAPAAQPDTEAAPETKARKPRARKPRASKKDAD
AAKLKEAAAETPQETTEVADAPAVAPPEPDEAPEPDAAPEAARKPARKRAKASAIVQAVI
ADPAPKAEPAADTTAEPDAPRKRGWWSRAVGK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaagatgcttattgatgccacccacgccgaggaaacgcgcgttgtggtggtc
gacggaaacaaagttgaagatttcgattttgagtctgtaaacaaacgccagcttgccgga
aatatctatctagccaaggtcacgcgggtcgaaccctcgttgcaggcggcctttgtcgaa
tatggcggcaaccggcacgggtttctggccttttccgaagttcaccccgattattaccaa
attccgcaagccgaccgtaaggcgctgcttgaagaagaggcccgcgccgcgcgtgaggtc
gaatccgaggaagaggaaaagccgaaaccgcgcagccgcacgcgccgtcgtggcggcaag
aagcgcgacgaggcacagcaggccgatgcccagcaaaacgaaactgctgacagcgacgag
ggcgctgcccagggcgacgctggcgatgtgaacgccacgcagccgctggaagatggcgcg
cccgcacaggccgatgaaacggtcagcgaaccggcggatattgacgcagatgccggcacc
ggcctggtcgacagcgatgatgacggcaacggcgacgaggacggcgacgaccatccgcaa
cttgttgaaacccccgaaggccgcaaccgccgccgcaagcccgcgcaaaagcgtggtgac
tctgagcaggctgatgacgaatacgaaaccgttggcgcggatgatgtggccgaagaggtt
gccccgcgccgtgcgccccgccaccgccgctacaaaattcaggaagtgatcaaggtgcgc
cagatcatgctgattcaggtggtcaaggaagagcgcggcaacaagggcgctgccgttacc
acctacctgtcgctggccggccgctactgcgtgttaatgcccaataccgcgcgtggcggt
ggcatcagccgcaagatcaccaatatctctgaccgcaagaagctgaaagaaatcgccgcc
gaaattcaggtgccgaacggcgccgggctgatcatccgcacggcgggcagccagcgcacc
aaggccgagatcaagcgcgattacgaatatctgctgcgccaatgggagcagattcgcgac
ctcacgctcaaatctatggccccggccccgatttacgaggaaggcagcctgatcaaacgt
tcgattcgcgacctctataaccgcgatatcgacgagatctgggtcgatggcgaggaaggc
tatcgcgaagccaaggactacatgaaaatgctcatgccgtcgcacgccaaaaacgtgaaa
cggtatgacgaatcattgccgctttttgcgcgctatcaggtggaaaactacctgtcggcc
atgttcaacccgaccgtgcagctcaaatcgggcggctatatcgttatcggcatcaccgaa
gcactggtcgcgatcgacgtgaactcgggccgttcaacgcgcgagggttccatcgaggaa
accgcgctgaaaaccaaccttgaggccgccgaagaagttgcgcatcagctcaagctgcgc
gaccttgccgggctgatcgtgattgacttcatcgacatggaagaccgccgcaacaatctg
gcggttgaaaagaagatgaaggacaagctgaagaacgaccgcgcgcgcattcaggtgggc
cgcatttcgggctttggcctgatggagatgagccgccagcgcctgcgccccggcatgatc
gaggccaccacccagccctgcccgcattgccacggcaccggcattacacgttccaacgac
tcgatggcgctggccattttgcgcgagctggaagaggaaggcgtgcgcaaacgcgcccgc
gaggtgctggtgacagcgccggtggaggtggccaactacctgctgaacgccaagcgcgag
catgtgaccacggttgaaacccgctttggcctgtcggtgcggatcgaggccgatgccagc
ctgatcagcccggaataccgtgtcgagcggttcaaaaccaccacccgcccggtggtcgag
gttgaaaccgtgtcctttacctcggtcgcagcaccggatgttgaagaagaccgcagcgca
gatgaggcccaggccgcgcccgcgcccgttcctgccgatcccgatgatgatgcaccgcgc
aaaaagcgccgtcggcggcggcggcgcggtggcaagggccgcaatggtgaggatggcagc
aacgaggccgaggcaagtgttgcagccgatggcgaaaaggccgccgaccctgcaccggaa
gcagaacctgccccccaggacgatgcgcccgccgcacagcctgacaccgaagccgcaccg
gaaaccaaggccagaaagccgcgcgcccgcaagccgcgtgccagcaaaaaagacgctgat
gcagccaagctaaaggaagccgccgccgaaacgccgcaggaaacaacggaggtcgcagac
gcacctgctgttgcaccacccgaaccggatgaagcacccgaaccggatgcagcacccgaa
gcagcgcgcaaaccggcgcgcaaacgcgccaaagcatcggccatcgttcaggcggttatt
gccgaccctgccccaaaggcagaaccggcagccgataccaccgccgaacccgacgccccg
cgcaagcgcggctggtggtcgcgcgcggttggcaaatag
DBGET
integrated database retrieval system
