Abyssibius alkaniclasticus: LGT41_0013145
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Entry
LGT41_0013145 CDS
T08825
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGT41_0013145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalk03019
]
LGT41_0013145
Messenger RNA biogenesis [BR:
aalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGT41_0013145
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
GlutR_dimer
Motif
Other DBs
NCBI-ProteinID:
UPH70728
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Position
complement(2645932..2647605)
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AA seq
557 aa
AA seq
DB search
MSKKNRLIYLPLGGAGEIGMNMYVYGYGPAGKEEYILVDAGVTFPDMDGTPGVDLIMADA
SWIIERADRLVAIFITHAHEDHVGALGLLWPQLQAPVYSRKFTAAIASNKMERAGVDAAN
VKTVGPLPHMVEAGPFRVGFLPLSHSIPEASGLVIDTPAGRIVHTGDFKCDPSPLVGEPF
DPEAMREVAKPGVLALVCDSTNVFSPHAGRSETSLREPITELMATASGLVVATTFASNVA
RLKTLAEGAKAAGRSVVVLGRAMRTMIQTGVETGVLKDFPAVVDIDLANDMPRGKVMVLA
TGSQGERRAASAQLAGDGYMGLSLKPDDTFLFSSKTIPGNETGVARIWNALAEKGVNVVA
DDDRYHVSGHANRPDLLEMQALINPQIVVPMHGEYRHLRKHAELSDENGRKTIIAPNGSL
VDLSAEHPKVVEHIETGRTYLDGSLLINALDGIVRERMHMALRGHVIVNVMLDDSGEVLD
APWAETLGVPAPKGDFEALSAAIEEGVAAELARAKNRDLDKDSKVEELVKRAVNKVCKAE
AGKKPVCTVLINRMEYE
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaaaaccggctgatttatttgccgctgggcggggccggtgaaatcggcatg
aacatgtatgtttatggctacgggccagcgggcaaggaagagtatatccttgtcgatgcg
ggcgtgaccttccccgatatggatggcacgccgggggtcgatctgatcatggccgatgcg
agctggattatcgagcgcgccgaccgtctggtcgcgattttcatcacacatgcgcatgaa
gaccatgtcggcgcgcttggcctgctctggccgcagcttcaggcgccggtttacagccgc
aagtttaccgccgcgattgccagcaataaaatggaacgcgcgggcgttgatgccgccaat
gtcaaaaccgtgggtccgctgccgcatatggttgaggccgggccgttcagggttggcttt
ctgccgctgtcacattccattcccgaggccagcggccttgtgattgacacaccggcaggc
cgcattgtgcataccggcgatttcaaatgcgacccaagcccgctggtgggcgagccgttc
gaccccgaagcaatgcgcgaagtggccaaacccggcgtgctggcgctggtttgtgacagc
acgaacgtgttctccccccatgcgggccggtcggaaaccagcctgcgtgagccgatcaca
gagctgatggccacggcctccggccttgttgtggccacgacctttgcctccaacgttgcg
cggctcaaaacgctggccgagggggctaaggctgcgggccgttcggttgtcgtgctgggc
cgcgctatgcgcacgatgatccagaccggcgttgaaaccggcgtgctgaaagattttccg
gccgtggtcgatatcgatctggccaatgacatgccacggggcaaggtcatggtgctggcc
accggcagccagggcgagcggcgcgccgcatctgcccagctggcgggcgatggttatatg
ggcctgagcctgaagccggatgataccttcctgttttcctccaaaaccattccgggcaat
gaaaccggcgtggcgcgcatctggaatgcgcttgcagaaaagggcgtgaatgttgtggct
gacgatgaccgctaccacgtttccggccatgccaaccgccccgatctgctggaaatgcag
gcgctgatcaacccgcagattgttgtgccgatgcatggcgaatatcgacacttgcgcaaa
catgccgaattgtcggatgagaatggccgcaagaccatcatcgcccccaatggcagcctg
gtcgatctgagcgccgagcatccaaaagtggtcgagcatatcgaaaccgggcgcacctat
ctcgacggcagcttgctgatcaacgcgctagacgggattgtgcgcgaacggatgcacatg
gcgctgcgcggtcatgtgattgtgaatgtcatgctggatgatagcggcgaggtgctggat
gcaccctgggccgaaacactgggcgtgccggcccccaagggcgatttcgaggcgctttca
gccgcgattgaggaaggcgttgccgccgagcttgcccgcgccaagaaccgtgaccttgac
aaggatagcaaggttgaagagctggtgaaacgtgcggtgaacaaggtctgcaaggccgaa
gccggcaaaaagccggtctgcaccgtgctgatcaaccgtatggaatacgaatag
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