Abyssibius alkaniclasticus: LGT41_0014895
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Entry
LGT41_0014895 CDS
T08825
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aalk
Abyssibius alkaniclasticus
Pathway
aalk03410
Base excision repair
aalk03430
Mismatch repair
aalk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LGT41_0014895 (recJ)
03430 Mismatch repair
LGT41_0014895 (recJ)
03440 Homologous recombination
LGT41_0014895 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aalk03400
]
LGT41_0014895 (recJ)
DNA repair and recombination proteins [BR:
aalk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LGT41_0014895 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LGT41_0014895 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGT41_0014895 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UPH71052
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Position
2995497..2997236
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AA seq
579 aa
AA seq
DB search
MSAFLGVETSLTGRCWFGPDDDVLRRAAQLVQQADLSEPLARILAARGIAPAEAAAHLAP
TLRALMPDPLRLRDMERAAARFLAAMQGAERIAIFADYDVDGGASAALILRYLHARGQTA
TLYIPDRIEEGYGPNTPAMQALGAAHDLIICVDCGTLSHAPIAAAGCDVLVLDHHLGGET
LPRAHAVVNPNRQDEDGALGYLCAAGVVFLFLAQTNRLLRDAGADTPDLMGLLDMVALAT
VADIAPLIGFNRALVRQGLSIMAQRGHIGLAALADMAGLNRAPEAYHLGYLLGPRINAGG
RVGAADLGARLLATQDATEAQSLAKRLDVLNAERRAIEAEVLQSAIAQAESRSTGGALVW
AAGAGWHPGVVGIVAARLKERFNRPAVVIGLDGGIGKGSGRSVNGVDLGGAIAKLVREGL
LEAGGGHKMAAGLTVAEGQLAAAMDRLTALLHAQGAAAPGPRDLHLTATIGAGTATPDFL
EDIARAGPFGAAAPAPRFAIAAARISFAKRAGETHLRLTLTDGHAKLDAIAFGAFTTPLG
AALQAHGGAPFHFAGRLEIDDWGGRRRAKLQLEDAAPAH
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgtttctcggcgttgaaacctcgcttaccggccggtgctggtttggcccggat
gacgatgttctgcgccgcgccgcccagcttgtgcagcaggccgacctgtccgaaccgctg
gcgcgcattctggccgcgcgcggcatcgcccccgccgaggcggccgcgcatctggccccc
acgctgcgcgcgctcatgcccgaccctttgcgcctgcgcgatatggaaagggccgccgca
cgctttctggccgccatgcaaggcgctgaacgcattgcgattttcgccgattacgatgtc
gatggcggcgcttcggccgcgctgatcctgcgctatctgcacgcccgcggccaaaccgcc
acgctttacatccccgaccggattgaagaaggctacggccccaatacccccgccatgcag
gcacttggcgcggcgcatgacctgatcatctgcgttgattgcggcacgctcagccacgcg
cccatcgccgcggcgggctgcgatgtgctggtgcttgaccaccatcttggcggcgaaact
ctgccccgcgcccatgctgtggtcaaccccaaccggcaggatgaggacggggcgcttggc
tatctttgcgcggcgggtgtggtgtttctgttccttgcccaaaccaaccgtttgttgcgc
gacgcgggcgccgacacgcccgacctgatgggcctgctcgacatggtcgcgctggccacg
gtggccgatatcgccccgctcatcgggttcaaccgcgcgctggtgcgccaggggctttcc
atcatggcgcagcgcggccatatcgggctggcggcactggccgatatggccgggctgaac
cgcgcgcccgaagcctaccacctcggctatctgcttggcccgcgcatcaatgccggtggc
cgtgttggcgcggctgatctgggcgcgcggctgctggccacacaagatgcgaccgaggcg
cagagccttgccaaacggctcgatgtgctgaacgccgagcgccgcgcgatcgaggccgag
gtgctgcaatccgccatcgcccaggccgaaagccgcagcaccggcggcgcgctggtctgg
gcggcgggcgcgggctggcaccccggcgtggtcggcatcgtcgcggcgcgactgaaagag
cgtttcaaccgccccgccgtggtcatcgggcttgatggcggcatcggcaagggctcgggc
cgttccgtcaacggggtcgaccttggcggtgccattgccaaactggtgcgcgaagggctg
ttggaggccggtggcgggcataaaatggccgcgggccttaccgtggccgagggccagctt
gccgccgcaatggaccggctcaccgccctgctgcacgcccagggtgccgccgcgcccggc
ccgcgcgatctgcacctgaccgcaaccataggtgcaggcaccgccacacccgattttctg
gaagatatcgcccgcgccggcccgttcggtgctgccgccccggccccgcgctttgccatt
gccgcagcccgcatcagctttgccaaacgcgcgggcgaaacccatttgcgcctgaccctg
accgacggtcacgccaagctcgacgccatcgcctttggcgccttcaccaccccgcttggt
gccgcgctccaagcgcatggcggcgcaccgttccattttgccgggcggctggaaatcgac
gattggggcgggcggcggcgcgcgaaactgcaacttgaggacgccgccccggcgcattag
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