Aeromonas allosaccharophila: I6G90_04555
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Entry
I6G90_04555 CDS
T07074
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aall
Aeromonas allosaccharophila
Pathway
aall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G90_04555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aall03019
]
I6G90_04555
Enzymes [BR:
aall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6G90_04555
Messenger RNA biogenesis [BR:
aall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6G90_04555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPR55705
UniProt:
A0A1Q5VSL9
LinkDB
All DBs
Position
1035232..1036635
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AA seq
467 aa
AA seq
DB search
MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML
QRLMESKRKVSPNRIRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMA
TRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKKR
QNLLFSATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIGLLSHLVT
SNNWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVA
TDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIE
RLTKQNIPCEQVAGFEASRETLDNIARGIGAPLRKEPRDPSEQRRTPPRPQGQGQRQGAG
RSASNGNAGGARTGNGGKPKPQGGQRPADGAGKPAQARRPRRATHNQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacttccctcggtctggccgaacccttgttgcgtgccgttgccgaacaaggc
tacgacaccccgtctcccattcagcagcaagcgatccccgccgttctggctggccgcgat
ctgatggcggcggcccaaacagggaccggcaagaccgcaggctttaccctgccgatgctg
caacgtctgatggagagcaagcgcaaggtttctccgaaccgcattcgtgcgctggtgctg
accccgactcgcgagctggccgcccaggtgggcgagagcgtgcgtaactacggcaaacac
ctgccgatgcgcagccacgtcgtgtttggcggcgtcagcatcaatccgcagatgatggcg
actcgccgtggtctggacgtgctggtggcctgtcccggccgcctgatggacctctacaac
cagaatgccgtcaagtttgacgaagtggagatcctggtactggacgaagcggaccgcatg
ctcgacatgggctttatccgcgacatccgcaagatcctggctctgatgccgaagaagcgc
cagaacctgctgttctccgctactttcgccgatgagatccgcgaactggccaccggtctg
ctggataacccggcggtgattgaagtcgccccgcgcaacagcaccgccgagcgtatcgag
cagctggttcacccgtgcgacaaggccaacaagatcggcctgctgagccatctggtcacc
agcaacaactggcagcaggtactggtgttcacccgtaccaagcacatggccaaccgcgtt
gccgagaccctcgacaagaacggcgtcagcgccgccgccatccacggcaacaagagccag
ggtgcccgtactcgcgcactggccggtttcaaggatggtagcgtcaaggtgctggtggcg
accgatatcgccgcccgtggtctggacatcgacaagttgccgcaagtggtcaacttcgag
ctgcccaacgtggcggaagattacgtgcaccgtatcggccgtaccggtcgtgccggtgct
gccggtcacgccatctctctggttgctgccgatgaagggaagcttatcaaggcgatcgag
cgtctgaccaagcagaacattccgtgcgagcaggtggctggttttgaagcctcccgcgag
accctggacaacatcgctcgtggtatcggcgcgccgctgcgcaaagagcctcgtgatccg
agcgagcagcgccgcaccccgccgcgcccgcaaggtcaaggccagcgtcagggtgccggt
cgttctgcatctaatggcaatgcaggtggcgcgcgtaccggtaacggtggcaagcccaag
ccgcaaggtggtcagcgtccggctgatggtgctggcaaaccggctcaggcccgtcgcccc
cgtcgcgctacccacaaccagtaa
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