Aeromonas allosaccharophila: I6G90_05410
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Entry
I6G90_05410 CDS
T07074
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aall
Aeromonas allosaccharophila
Pathway
aall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G90_05410 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aall03019
]
I6G90_05410 (rne)
03009 Ribosome biogenesis [BR:
aall03009
]
I6G90_05410 (rne)
Enzymes [BR:
aall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6G90_05410 (rne)
Messenger RNA biogenesis [BR:
aall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6G90_05410 (rne)
Ribosome biogenesis [BR:
aall03009
]
Prokaryotic type
rRNA processing factors
I6G90_05410 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QPR55865
UniProt:
A0A7T2UNV3
LinkDB
All DBs
Position
1224459..1227593
Genome browser
AA seq
1044 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPEGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQERTAPVLIHQESNVIVRAIRDYLRRDVGEILIDDPVIFERA
RAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPTYQPKQAQVIEREQPLLQGFAQPVQPAPVAPQQ
PVAPVAAAPAEAGFFSKLIKGISGLFSSDSAPAEVKAPAEKPAAREARKDEGHRHQRDET
RARGQRPRRDDNRNNRNNAEAGEKREGGNREAGENRNRRPRKEREPRQEREARSETRGEV
RSEQRMEREPRQEREPREPRQERAPRPAREPRAPREARAEVVVEAVEAVDAVAIEPRQEK
ELKVAERRERRQLRKQIRVDVAAADTPALPVDDAAVQAEVIDAVGNEQEEQSEGQRRSRR
TPRTQRIEGQRRKRINEDARSQRDEEQPATESQLTTAAQADAAKVKAEEPVVPVVTIPSA
EAIAAALQASSALTEHVVAEAIAEEAAEQATAQVAATQADVATSPVVETVAEVVVAAEPE
VAVVAAPVAEVVTATEVETAHVVETAPVIEEAPAVTAPVVEAAPVAAVVETPAPAAVVET
PAAVATVVVEEAPVVAKQVVHGAGLLARARKASAPMATPAEAPALPAREPVNHPPLVRNE
VSTSGRHGGSTAAVNVATSPAGRP
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgcaactcaagaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaagaaagcgaac
atttacaagggtaagatcacccgcgtagaacccagccttgaagctgcttttgttgactac
ggcgccgagcgccacggtttcctgccgttgaaggagatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggtcaggaagtt
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agcctggccggtagctacctggtgctgatgcccaacaacccccgtgccggtggtatctcc
cgccgtatcgagggtgatgagcggaccgaactgaaagaagccctgagcggattgaccgtg
cctgaaggcatgggcctgatcgtgcgtactgccggtgtgggcaagtctccggaagagctt
gagtgggatctgaacgttctgctcaaccactgggactccatccacaaggcgtcacaagag
cgtaccgctcccgtgctgatccaccaggaaagcaacgtgatcgtgcgcgctatccgtgac
tatctgcgtcgcgatgtgggcgagatcctgatcgacgatccggtgattttcgaacgcgcc
agagcccatatcgagctggttcgccccgatttcctcaaccgtgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagattgagagccaaatcgagtctgccttccagcgt
gaagtgcgcctcccctccggcggcagcatcgttatcgatccgaccgaagccttgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagactgcgctgcaa
accaacctggaagcggccgacgaaattgcccgtcaattgcgtctgcgcgacttgggcggc
ctgatcgttatcgacttcatcgacatgaccccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggaccgagcccgcattcagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccaacgtctgcgtccctccctcaacgagtccagtagt
catatctgcccccgttgccagggtcaaggggttatccgtgacaacgaatctctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggc
caggtgcctgtggatgttgccgcctatctgcttaacgagaagcgtgccgccatcgccagt
ctggaacagcgcaatgatgtccgtgtttacatcattccgaaccagcatctggaaaccccg
cactacgaagtaacccgcattcgtcagaacgagatcccggaagcggccagctacgagctg
aaaaccgaaattgccaagccgacctaccagccgaaacaggcccaggtgatcgagcgtgag
caaccgctgctgcaaggctttgcccaaccggtacaaccggcccctgttgccccgcaacag
ccggtggcgcccgttgctgcagctcctgccgaagccggtttcttcagcaagctgatcaaa
ggcattagcggcctgttcagcagtgatagcgcccctgccgaagtgaaagcgcccgccgag
aaaccggcagcgcgggaagctcgcaaggatgaaggtcatcgtcaccagcgtgatgagacc
cgcgcccgcggccagcgtccccgtcgtgacgacaatcgcaacaaccgcaacaatgcggaa
gctggcgagaagcgtgaaggtggcaaccgcgaagccggtgaaaaccgcaatcgccgtccc
cgcaaagagcgtgagccccgtcaggaacgtgaagcccgtagcgagacccgtggtgaagtg
cgcagcgaacagcgcatggaacgtgaacctcgtcaggagcgcgagcctcgcgaacctcgt
caagagcgtgccccacgtccggcccgtgaaccgcgtgctccccgtgaggcgcgcgccgag
gtcgttgttgaagcggtagaagccgttgatgcagtcgccatcgagccgcgtcaggagaaa
gagctgaaagtggccgagcgccgcgaacgtcgccaactgcgcaagcagatccgcgtcgat
gtcgccgctgctgacacccctgccctgccggttgacgatgcagcagtgcaagctgaggtg
atcgatgcagtgggtaacgagcaggaagagcagagtgaagggcaacgccgttcacgtcgc
actccgcgtacccagcgtatcgaaggccagcgtcgcaagcgcatcaacgaagatgcccgc
agccagcgtgatgaagagcaaccagcaacagagagccagctcactaccgctgcccaggct
gatgctgccaaggtaaaagccgaagagccggtagtacccgtggtcaccatcccgagcgcg
gaagccattgctgccgccctgcaggcctcttccgcgctgaccgagcacgtcgttgctgag
gccattgccgaagaagctgccgagcaggccactgcccaggttgcagcaactcaagccgat
gttgctaccagcccggttgttgaaactgtcgctgaggttgtcgttgccgcagagccagaa
gtagccgttgtcgctgcgccggttgccgaagtggtcaccgccaccgaggtggaaactgca
cacgttgttgaaactgctccggttattgaagaagcaccggccgtaacagctcctgttgtg
gaagccgcacctgtcgccgctgttgtcgaaacaccagcacctgctgctgtcgtcgaaacc
ccggctgccgtggctacggtagtggtggaagaggcaccggtcgtcgccaaacaggtagtt
cacggtgccggcttgctggctcgtgctcgcaaggcatcagcgccgatggcaacccctgcc
gaagcgccagccctgcctgctcgtgagccggttaaccacccgccgctggtacgcaacgag
gtgagcacatccggtcgtcatggtggtagcacagctgccgtcaacgtggctaccagccct
gctggtcgtccgtaa
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