Aureimonas altamirensis: LUX29_11390
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Entry
LUX29_11390 CDS
T07762
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aalm
Aureimonas altamirensis
Pathway
aalm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LUX29_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalm03019
]
LUX29_11390
Messenger RNA biogenesis [BR:
aalm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LUX29_11390
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UHD47815
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Position
2344062..2345672
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AA seq
536 aa
AA seq
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MNLALYGYGPENNREWIAVDCGVAFAGPEQPGVDLIFPDIRFLESQRHNLKAIIITHAHE
DHFGGLLDLWPRLKAPVYATPFTAALLEAKREGEAGAAKVPVNVFSAGDRFKVGPFEIEA
VNVTHSIPEPVALAIRTPLGTVVHTGDWKIDLTPALGKPTDEARLRAIGDEGVLALICDS
TNAMREGVSPSEQDVNRSLAQIIKAAEGRVALTTFSSNIGRIRSIAEASAEAGRQVLLMG
RSMKRMADVAGELGYMDKLPPFLSEQDFGYIPREKAVIVLTGSQGEARAALARLGRDEHP
SVALSKGDMVIFSSRAIPGNEKAINEIKNNLVELGVQVVEDHDKLVHVSGHPRRTELRQM
YEWIRPSIAVPAHGEAQHLEAHAQLARDLGVRNVVSLRNGQMVRLAPGFAEVIDEVPVGR
IYKDGFLVGTQDEMGIGERRKLSYAGHVSVVVQLNARLELRGDPELSMIGLPKEDFEGED
MEEALVDAAAGAVESIPKARRKDFALVREAVRRAIRGEANDAWGKKPLVTVFVIGG
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgccctctacggctatggaccggaaaacaacagggagtggatcgccgtggat
tgcggcgtcgcctttgccgggccggaacaaccgggggtcgaccttatcttccccgatatc
cggtttctggaaagccagcgccacaacctcaaggccatcatcatcacgcatgcgcacgaa
gatcacttcggcggtttgctggatctgtggccacgcctgaaggcgccggtctatgcaacg
cccttcaccgcggcgctgctggaggccaagcgcgagggcgaggcaggggccgccaaggtt
ccggtgaacgtcttttccgccggcgaccggttcaaggtcggtcccttcgagatcgaggcc
gttaacgtgacgcactccatcccggagccggtagcgctggcgatccgcacgccgctcggc
accgtcgttcataccggcgactggaagatcgacctgaccccggcgctcggcaagccgacg
gacgaggcgcggttgcgcgccatcggcgacgagggcgttctggccctgatctgcgattcc
accaacgccatgcgcgaaggcgtttcgccgagcgagcaggacgtaaaccgcagccttgcg
cagatcatcaaggcggctgaggggcgtgtggccctgacgaccttctcgtccaatatcgga
cgtatccgctcgatcgcggaggcttcggccgaggcggggcggcaggtgctgctgatgggc
cggtccatgaagcgtatggccgatgtcgcaggcgagctcggctacatggacaagttgccg
ccgtttctgtcggagcaggatttcggctacatcccgcgcgagaaggccgtcatcgtgctg
accggcagccagggcgaggcgcgggccgcactggcccgccttgggcgtgacgagcatcca
tccgtcgccctttcgaagggcgacatggtcatcttctcgtcccgggcaattcccggcaac
gagaaggccatcaacgaaatcaagaacaatctggtcgagcttggcgtgcaggtggtggag
gatcacgacaagctggtccacgtatcgggccatccgcgccgcaccgaactgcgccagatg
tacgagtggattcgcccatcgatcgcggtgcccgcgcatggcgaggcacagcaccttgag
gcgcatgcccagcttgcccgcgaccttggcgtgcgcaacgtcgtttcgcttcgcaacggg
cagatggtccgcctggcgcccggctttgccgaagtgatcgacgaagtgcccgtcgggcgc
atctacaaggatggcttcctggtcggcacccaggacgagatgggtatcggcgagcgccgt
aagctgtcctatgccgggcatgtctcggtcgtcgtccagctcaacgcgcggctcgaattg
cgtggcgaccccgaattgtcgatgatcggcctgccgaaagaggatttcgagggcgaggac
atggaagaggcgctggtggatgctgccgcaggcgcagtcgaaagcattcccaaggcgcgc
cgcaaggatttcgcactggttcgtgaagccgtgcgccgcgcgatccggggcgaagccaac
gacgcctggggcaagaagccgctcgtgacggttttcgtgatcgggggataa
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