Advenella alkanexedens: Q3V95_05055
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Entry
Q3V95_05055 CDS
T09248
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3V95_05055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaln03019
]
Q3V95_05055
Enzymes [BR:
aaln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q3V95_05055
Messenger RNA biogenesis [BR:
aaln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q3V95_05055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WKU20394
LinkDB
All DBs
Position
1066290..1067744
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AA seq
484 aa
AA seq
DB search
MTDTSNANTESAKSFSEFGLHPDLLKAISASGYTVATPIQAQAIPAIIDGRDVMGAAQTG
TGKTAAFTLPLLHRLMPYASHSTSPARHPVRALILAPTRELADQVADSVKRYSESCPLRV
AVVFGGVDISAQKEELRKGCELVIATPGRLLDHIEQKTINLSQVNTLVLDEADRMLDMGF
LPDLERIVKLLPKSRQSLLFSATFSGEIRKLARSFLKSPIEINVAPQNATAENVTQIAYP
VSGNNKQAAVLYLLKSRGLSQVIIFVNTKIGASRLTHELVKEGIKAESIHGDKSQLERIK
ALESFKSGETTVLVATDVAARGLDVAGLPCVINVDLPFNPEDYVHRIGRTGRAGASGEAI
ALFTEHEEKLLEDIEKLIKIKVPRGTLNIPEVFQHRGHASTSGDSRARGKGERFKRTFPA
SRPAPIDDFFFKPYEPAVKDPHKEAQRLQQEQKWMEHHATSKQPQLAVLLGGRPKNIKPA
ESGD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacggatacctctaatgccaatactgaaagtgcaaagtctttcagcgaatttggtctt
caccccgatctcttaaaggccatttcagcaagtggttatacggtcgccacacctattcag
gcccaggccatacccgctattatcgatggccgtgatgttatgggggctgcccaaaccgga
accggtaaaaccgcggcctttacattacccctgttacatcgtttaatgccctatgccagt
cacagtacttcgcctgccaggcatccggtgcgtgcacttattttagcccccacccgcgag
ttggccgatcaggtggctgacagtgtcaagcgttacagcgaaagttgccccttgcgtgtg
gctgtggtatttggaggcgtggatatttccgcccaaaaagaagagctgcgcaaaggatgt
gagctggtgattgccacgcctggccgattgctggatcacatagaacaaaaaaccatcaat
ctgtcccaggtgaataccctggttcttgacgaggccgacaggatgctggatatgggcttt
ttgcccgatcttgagcgcattgtcaaattgttgccaaaatcccgccaaagtctgcttttt
tctgccacgtttagtggtgaaatcaggaaactggcgcgttcattcctgaaatcgcccatt
gaaatcaatgtggcgccgcaaaatgccacggccgaaaacgtgacccagattgcctacccg
gtatccggcaataacaagcaggccgcagtcctgtatttgctcaaatcacgcggcctcagc
caggtcattatttttgtcaataccaaaattggtgccagccgtttaacgcatgaactggtc
aaggaaggcattaaggcagaatccatccatggtgacaaatcccagctcgagcggatcaag
gcactggagtccttcaaatcgggtgaaaccaccgtactggtggcgaccgacgttgcggcg
cgtggccttgatgtggccggtttgccctgtgtgattaacgttgatcttccctttaaccct
gaagattacgtgcaccgtatcggacgtacgggcagggctggggcttccggtgaggcaatt
gccttgtttaccgagcatgaggaaaaactgcttgaggatatagaaaagcttatcaagatt
aaagtgcctcgtggcactcttaatattcctgaagtattccagcatcgtggccatgccagt
acgagtggtgattcgcgtgcacgtggtaaaggagagcgttttaaacggacttttcctgca
tcaagaccggcgcctatcgatgattttttcttcaagccttacgagcctgcggtcaaggat
ccgcataaagaagctcaacggctgcaacaggagcaaaaatggatggagcaccatgccacg
tccaaacagccacagttggcggtcttgttaggtgggcgtcctaaaaatatcaagcctgct
gaatcaggtgactga
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