Advenella alkanexedens: Q3V95_06690
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Entry
Q3V95_06690 CDS
T09248
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aaln
Advenella alkanexedens
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaln03019
]
Q3V95_06690 (hrpA)
Enzymes [BR:
aaln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q3V95_06690 (hrpA)
Messenger RNA biogenesis [BR:
aaln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q3V95_06690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
SRP54
AAA_25
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
WKU20688
LinkDB
All DBs
Position
1411499..1415302
Genome browser
AA seq
1267 aa
AA seq
DB search
MSNEAVPERLPPSISYPEDLPVSAKRAEIARALQAHQVIIVCGETGSGKTTQLPKICLEL
GRGLKGMIGHTQPRRLAATSVAKRIAQELNTPMGEWVGYQIRFSDKTGPGAAIKLMTDGI
LLAESQRDPLLRRYDTIIIDEAHERSLNIDFLLGFLKQLLPRRKDLKLIITSATIDADRF
ATHFAGKNGQKAPVIEVSGRLYPVEVRYRPIRFFDDEESAGTQSESSRLDRDEEKDLIDG
IVDAVDECAQHGPGDILVFLPGEREIREAAESLRKHHPAGTMVLPLFARMSQADQERIFH
PSTNQRRVILATNVAETSLTVPGIRFVIDSGLARVKRYSWRNKVEQLQIEPVSQASANQR
AGRCGRIGPGVCIRLYDEDDFKLRAPFTDPEILRSSLASVILRMKALRLDGIEQFPFVDK
PTGKAIADGYHLLQELGAIDDANKLTPVGRSLAKLPVDPRLARMILAAKEHQCLAEMLVI
ASALSISIQDPRERPFNAKEASDQAHAKFKDDKSEFMSYLKLWNWYNDAVANKASQRKLV
EKLRTSFLSPLRLREWHDVHTQLHSLVREQGWRLNQSDATYEQIHKALLTGLLGNLGFKG
DEAPHYQGAREIRFFIHPGSTLIKKAGKWIMAAELVETSRLFARCIANIDPRWIESIGAH
LLKKQWSDPVWNAKLGQVQANERASLYGLQIYHGRKVNYGRIAPVESREIFIRDALVAGD
IDSKLPFIVRNNRLIREIEKLEHKSRRPDILVDDELIFAFYNKLIPEHICQTATLESWYK
DLPEASQQALILNRDDLMRHEAIGVTTEVFPKKLVWDGIDLALDYHFEPGSPRDGVTMTI
PVYALNQIDGTRCQWLVPGMLKEKVLLLLKSLPQKLRRHCVPLPDYAAGFHQRWFERLAN
PSMPLTTAIAQDIWDQCKVRVKEEDFKLESLPVHLFMNFKVIDEHGRMLSAGRNLNQLKA
EHGMQAQETFQRLASKDRDVAQVLASEHITEWNFGQLPELLEIKKKNQSFIGYPALVDNG
ESCDLDVFDDPETARQKHRAGLLRLFRIALKDQLKFLSKNITDLTRMSMIYMPLGSQEEL
RDQIVDCALIQACLASPLPEDANAFEQRKQDAKGRLGLLIQEIARLAGTILSEWAGVQKK
LPSIKSHKQAYEDIVANLGVLMSKDFLKKNPYTQLVHYPRYLKACSARIDKLRSDPARDA
RIMAEMAPLLVNYQRMRSTLKGAPDERLDDFQWLLQELRVALFAQELRTPMPVSVKRLQK
AWETIIR
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgaagccgtgcccgagcgattgcctccttccatctcttaccctgaagacttg
cctgtcagtgcgaaaagggcggaaatcgccagggcgcttcaggcccatcaggtaattatt
gtatgcggtgaaaccggttcgggcaaaacaacccagttgccaaaaatctgtcttgagctg
gggcggggccttaaaggtatgattggccatacccagccacgccggctggccgccacgtct
gtggccaaacgtattgcccaggaattgaatacgcctatgggtgaatgggtggggtaccag
attcgctttagcgataaaacaggtcccggtgccgccatcaagctgatgactgatggtatt
ttgctggctgagtcacagcgtgatcccctgctcaggcgctacgatacgattattatcgat
gaagcgcacgagcgcagtctgaatattgattttttactggggtttttaaagcagttgttg
ccccggcgcaaagacctgaagcttatcattacctctgccacgattgatgcagaccgattt
gccacgcactttgccggcaaaaacgggcagaaggcgcccgttattgaagtctcggggcgc
ttgtatccggttgaggtgcgttaccgtcccattcgtttttttgatgacgaggaatccgcc
ggaacgcagtctgagtccagtcgtctggaccgggatgaagaaaaagacctgattgatggc
attgtggatgcagtggatgaatgtgcgcaacatggtccgggtgatatattggttttcctg
cccggagaaagggagatccgcgaggcggccgagtccctgcgcaagcatcatccagccggt
accatggtgttgcctttgtttgcccgcatgtctcaggccgaccaggaacgtatttttcac
ccaagcaccaatcagcgcagggtgattctggctaccaacgtggctgaaacctccttaacg
gtaccgggtatccgttttgtgattgacagtggtctggcccgggtcaagcgttactcctgg
cgcaacaaggttgaacagttgcagattgaaccggttagccaggcatcggccaaccagcgg
gcaggtcgttgtggccgtatcgggccaggcgtttgtatccggctttacgatgaagatgat
ttcaagctgcgagcaccttttaccgatcctgaaatcctgcgttcatccctggcttcggtt
attttgcgcatgaaggccttgcgactggacgggatcgagcaatttccctttgtggataaa
ccaacaggcaaagcgattgccgatggttatcaccttttgcaggaactgggggcgattgat
gacgccaataaactgacaccggttggtcgtagtctggccaaattgccagtggatccacgc
cttgcccgcatgattctggccgccaaagaacaccagtgtctggcagaaatgctggtgatt
gcgtcagcattgtctatttctattcaggatccccgggagcgtcctttcaatgcgaaggag
gccagtgaccaggcgcatgccaaattcaaggatgacaaatccgaattcatgtcgtacctg
aagctctggaactggtataacgatgcagtggccaataaggcctcccaaagaaagctggtg
gaaaagctcaggacttcttttctgtcgcccttgcgtttgcgtgaatggcatgatgtgcat
acccagttgcacagcctggttcgggagcaggggtggcggcttaaccagagcgatgccact
tacgaacaaattcacaaggccttgttaaccggcttgctgggcaatctgggttttaaaggt
gatgaggcaccgcattatcagggagcccgtgaaatccgcttttttattcacccaggttcg
acgctgattaaaaaagcgggtaagtggattatggccgcagaactggttgaaacttcgcgg
ctgtttgcgagatgcattgccaatattgatcctcgctggatagagtctattggcgcccat
ttgctgaaaaaacaatggtccgacccggtctggaatgccaagttggggcaagtgcaggcc
aatgaaagggccagtttgtacggtttgcaaatttatcatgggcgcaaggtgaattatggc
cggatagcgccagtcgagtcacgggaaattttcattcgggatgcccttgtggcgggtgat
attgactcaaaattaccgtttattgtgcgcaacaaccgcttgatacgtgaaatcgaaaag
ctggagcataagtcgcgcaggcccgatattctggtggatgatgagctgattttcgctttt
tacaacaaactcattcccgaacatatctgtcagaccgccacacttgaaagctggtataaa
gatttgcctgaagccagccagcaagcgctgatcctgaaccgggatgacttgatgcgccat
gaggccataggcgtgaccaccgaggtgtttcccaaaaagctggtatgggatggcattgat
ctggcccttgattatcattttgaaccgggttcacctcgtgatggggtgaccatgacgatt
cccgtttatgcccttaaccagattgacggtacacgttgtcagtggctggtgccaggcatg
ctcaaggaaaaggtgcttttgttgctgaagtcactgccccaaaagctgcgtcgtcactgc
gtaccactgcccgattatgcggcgggtttccatcaacgctggtttgagcggctggctaac
cccagtatgcctttgacaacggctattgcgcaagatatttgggaccagtgtaaggttcgg
gtcaaagaggaagacttcaagcttgaatccttgccggtgcatttattcatgaactttaaa
gtcatcgatgaacacggacgtatgttgtcagccgggcgcaatctgaaccagctcaaggcc
gagcatggcatgcaggcgcaggaaactttccagcgcctggccagcaaagatcgtgatgtt
gcccaggtgctggccagtgagcacattaccgaatggaattttgggcaattgcctgaactg
ttggaaatcaaaaagaaaaaccagtcattcatcggttatccggcattggtggataatggt
gagtcctgtgatttggatgtgtttgatgatcctgaaacggcgcgtcagaagcatcgggcc
ggtttgctgcgactttttcggattgccctgaaagatcagcttaaattcttaagcaaaaac
attaccgatttgacgcgcatgagtatgatttacatgcccttgggctcacaggaagagttg
cgtgaccagattgttgattgtgccctgatccaggcctgtctggccagtcccttgcctgag
gatgccaatgcttttgaacaaaggaaacaggatgccaaagggcgtctgggcctgttgatc
caggaaattgcccgtctggcaggcacaatcctgagtgagtgggccggggtgcagaaaaaa
cttccgtccatcaaatcgcacaaacaggcttatgaagatattgttgccaatctgggtgtt
ttgatgagcaaggacttcctgaaaaagaatccgtatacgcaattggtgcattatccgcgc
tatctcaaggcctgttcggcacgaatagacaagttgcgcagtgatcctgcacgggatgca
cggataatggccgagatggcgccattgctggtgaattaccagcgtatgcgaagtacactc
aagggcgctcctgatgagcgtcttgatgactttcagtggttgctgcaagagttgcgcgtt
gccctttttgcccaggaactcagaacccctatgcccgtatcggtcaagcgcctgcaaaag
gcgtgggaaaccattattcgttga
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