Advenella alkanexedens: Q3V95_11425
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Entry
Q3V95_11425 CDS
T09248
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3V95_11425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaln03019
]
Q3V95_11425
03009 Ribosome biogenesis [BR:
aaln03009
]
Q3V95_11425
Enzymes [BR:
aaln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q3V95_11425
Messenger RNA biogenesis [BR:
aaln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q3V95_11425
Ribosome biogenesis [BR:
aaln03009
]
Prokaryotic type
rRNA processing factors
Q3V95_11425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WKU18894
LinkDB
All DBs
Position
2387237..2390413
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDIDIETAGREQRKGSIYKAVITRIEPGLEACFVNY
GHDRHGFLPFKEVARSYFKEGIDVRGARIQDALSEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERQELREAMDQLDLPAGMSMIARTAGIGRSVAELE
WDLKYLLQLWNAIDSAAKEYPAPVLIYQESSLVIRAIRDYFSPDISEILIDTDAITDQAV
AFMKDVMPDNVNRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVAI
DVNSARSTRGTDIEETALRTNLEAAEEAARQLRLRDLGGLIVIDFIDMEDSKNQRAIEQK
LRDALHFDRARVQMGKISRFGLMELSRQRLRPSLNEGSHITCPRCNGTGVIRDVESSALN
ILRLLQEEAMKDNTAALHVQLPVEVATYLMNEKRSDIVKMESRLKINVVLIPNKHLETPH
HHIERIRYDDNRLDEPKTSIDLIEQPSTIVTWESSTEKAVHNERPEALVKSISRDQPAPI
VPAPKTEPLTPAPQPGLFKRLLSWFAGEKAVAPEAEPAKEDKPRQASRGKTGQRNERNTG
RNRRNTEKRPEAAETEEDKRRNPRAAKPRAQDNRNKERDAKATPAEIVNDTDSSPSAEEN
SPRSRSRRSRTRNRRENTNDSKEQNLNQGTDIPESAGDEIAVKQRPARVKAEPEVVQETD
GTPFTAATAVVATMAALPATEATEETAGEELADNATAFDEETGEALDPNKRRRPRRRSRR
TRRPADEQGSTENTSAPAAFVPNEVLLAEAESLSQQAPEAAPAAKVEPVQDSVTETMQEA
PVTATAPEAQAEEAVLASPAQAEPVASPSSEPAPVTRTETIETEKTESMPVTQTEPTASA
ADDSTAINSQPVLPEETSQPATAEPAVSASETAEQPAATETLPENATDNSAAIVSTPAPV
AETATEEVSSPAVASAESETVIESTEVTPTPVQTVTSVSATGTQASLEEIASSTGMQWVE
TKASLIQPVELPKPKLGRARKTVAKTEEVPLEIVETKK
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcgacgcaccaagaagaactacgcgtcgcgattgtagat
gggcaaaaactcatcgacatcgacatcgaaacagcaggccgggaacaacgcaaaggcagc
atttacaaagccgtcatcacccggatcgaacccggacttgaggcctgctttgtcaactac
ggccatgatcgtcacggtttcctgcccttcaaggaagtggcccgcagctacttcaaggaa
ggcatcgatgtccggggcgcccgcatccaggatgccttaagtgaaggccaggaactcatc
atccaggtcgaaaaagaagagcgtggcaacaagggcgctgccctgaccacctttatttcc
ctggcaggccgttacctggtcctgatgcccaacaacccgcgtggcggtggtgtttcacgc
cgcattgaaggtgaagagcgccaggaactgcgtgaagccatggaccagcttgacctgccc
gctggcatgagcatgatcgcccgcacggcaggaatcggccgttcggttgccgaactggaa
tgggacctgaagtacctgctgcaattatggaacgccatcgattctgccgccaaggaatat
cctgcgccggtcctgatttatcaggaatccagtctggtcattcgcgccatccgcgactac
ttctcacccgacatcagcgaaatcctcatcgacaccgatgcgattaccgaccaggctgtc
gccttcatgaaagacgttatgcccgataacgtcaatcgcgtcaaacgctaccgtgacgat
atccccctgttctcccgcttccagatcgaacatcagattgaaaccgcctattctcgtacg
gtacagcttccgtctggcggcgcgattgtgattgatcacacagaagccctggtggccatc
gatgtcaactcggcccgctccacccgcggtaccgacatcgaggaaaccgccttgcgcacc
aaccttgaggcagccgaagaggcagcccgccaattgcgtctgcgcgacttgggtggcctg
atcgttatcgacttcatcgatatggaagacagcaagaaccagcgcgcgattgaacaaaaa
ttgcgtgacgccctgcactttgaccgggctcgcgtccaaatgggcaaaatctcgcgtttt
ggccttatggaactgtcacgccagcgcctgcgcccgtccctgaacgaaggttcacacatt
acctgcccgcgctgtaacggcaccggtgttatccgtgacgtggaatccagtgccctgaat
atcctgcgcctgctgcaggaagaagccatgaaagacaacacggcagccctgcatgtccag
ttgccggtagaagtggccacttacctgatgaatgaaaagcggtccgacattgtcaaaatg
gaatcccgccttaaaatcaacgtggtgcttattcccaacaagcacctggaaacccctcat
catcatatcgaacgcattcgttacgatgacaatcgccttgatgaacccaaaaccagcatt
gacctgattgaacagcccagcaccatcgtgacctgggagtccagtacggaaaaagccgtt
cataacgaacgtcccgaagccctggtcaagagtatttcacgtgaccagcctgcaccgatc
gttccggcccccaaaacagaacctttaacccccgctccgcagcctggtttattcaaacgc
ctgctaagctggtttgccggcgaaaaagcggtagcgcccgaagccgaaccagccaaagaa
gacaagccacgtcaggcaagccgtggtaaaaccggccaacgcaacgagcgcaacaccggc
cgtaaccgccgcaacacggaaaaacgccccgaggccgctgaaactgaagaagacaagcgt
cgtaatcctcgcgcggcaaaaccacgcgcacaggataaccgcaacaaagaacgcgacgcc
aaggccacaccggcagaaatcgtgaacgataccgatagcagtccatctgccgaggaaaac
agtccacgctcacgcagccgtcgcagtcgcacccgtaaccgtcgtgaaaacacaaacgac
agcaaagaacagaacctgaaccagggcactgacattcctgaaagtgcaggcgatgaaatc
gcggtcaaacagcgtccggcccgagtgaaagccgaaccggaagtcgttcaggaaactgac
ggcacccccttcaccgccgcaactgctgtggtcgccaccatggctgccctgcccgctacc
gaagctactgaagaaacggctggcgaagagctggcagacaacgccaccgcattcgatgag
gaaaccggtgaagcgcttgatccaaacaaacgccgtcgtccacgccgtcgcagccgtcgc
acccgtcgcccggccgatgaacagggaagcacagaaaacacatcggcacctgctgctttt
gtgccgaacgaagtgcttttggccgaagcggaaagcctttcccaacaagccccagaggca
gcaccagccgccaaagtggagcccgtgcaagacagcgtgactgaaaccatgcaggaagcc
ccggtaacagctacagcgcccgaggcacaggctgaagaagccgttttggctagccctgcg
caggcagagcctgtggcaagcccgtcttctgaacctgcccctgtcaccaggactgaaacg
attgaaacggaaaaaaccgaatcaatgcccgtcacccagacagaacccacggcgtctgcc
gcagatgactcaacagccatcaacagccagcctgttttgcctgaagaaaccagccagccg
gccactgccgaacctgccgtatcagccagcgagacagcagaacagccagctgctacagaa
acgctacctgaaaatgccactgataacagtgcggcaattgtaagtacgccagcgcctgtg
gcagaaaccgccactgaagaagtatccagcccggcagtcgcctctgcagaaagcgaaact
gtcatagaaagcactgaggtcacaccgacaccagtacaaaccgtgacatccgtctccgca
accggtacacaagcttcacttgaggaaattgcctccagcaccggcatgcaatgggttgaa
accaaagccagtctgatacaacctgtggaacttcccaaacccaaattgggacgtgcccgc
aaaacggttgcaaaaaccgaagaagtcccattggaaatagtggaaaccaaaaaataa
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