Advenella alkanexedens: Q3V95_11605
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Entry
Q3V95_11605 CDS
T09248
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q3V95_11605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaln03400
]
Q3V95_11605 (mfd)
Enzymes [BR:
aaln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q3V95_11605 (mfd)
DNA repair and recombination proteins [BR:
aaln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q3V95_11605 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
SNF2-rel_dom
AAA_30
ERCC3_RAD25_C
UB2H
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WKU18927
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All DBs
Position
2429083..2432517
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AA seq
1144 aa
AA seq
DB search
MSLPSIPKLLSSLKPGQRFNHPCPAGSGDAWLLAELAQATRKTIVVLCADPLQAQRLAEE
TRRFNPQVKARQLPDWETLPYDGFSPHQDLISARLKTLHALMLEEVDILTVPVTTALYRL
PPPSFLAAYTFSFKKGDRVNESALREQLILANYTHVTQVTAAGEFCIRGSLIDLFPMGSV
VPYRIDLFDDEIDSIRSFDIDTQRSLYPVNEIQLLPGREFPMDEEARTRFRSRFREVFEG
DPSRCLPYKDVGNGIAFAGIEYYLPLFFDETATLFNYLKPETITVTLGDLEDAITRFHSD
TNSRYNFIKSDRERPVLPPEQLFLSRDQIYNQFKNFARLNLDSKQASEEITPAPNVAVAR
RAEHPFAKLQEMVARGQHKILLCADSAGRRETLLQMLQEHMLTPATSQETIHEFIGSESA
FGMVVAPINTGFLVKHLNFALLTENDLYPGTATYTQRRRKQQERSSDVDAMVRDLSELRA
GDPVVHVQYGIGRYHGLVNMDLGEGDVELLHLEYANKSTLYVPVSQLHVIARYSGADPEQ
APLHQLGSGQWDKARKKAAKQIRDAAAELLNLYALRAARQGYSFKLPFSDYQSFVEGFGF
EETADQAAAIEAVINDMTSGKPMDRLVCGDVGFGKTEVALRAAFLSVANGKQVALLCPTT
LLAEQHAQTFADRFADWPVNVAELSRFRSGKEVAATIEGIAKGTVDIVIGTHKILSKDVQ
FKELGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATA
PQKRLAIKTFVRREDGSTIREAVLRELKRGGQVYFLHNEVETINNRKARLQELVPEARIA
VAHGQMPERELEEVMKGFYQQRFNVLLCTTIIETGIDVPSANTIIIHRADRLGLAQLHQL
RGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQSMEELGSGFFLAMHDLEIRGTGEVL
GESQSGNIHEIGFSMYTDMLNEAVRALKAGEEPDLESPFAPVCEVKLHTSALLPSDYCGD
VHARLSIYKRLSHARNEDELLSIQEELIDRFGKLPEPAVMLITTHRLRILAEPLGIIRLD
ISDEQAMLNFGPKANIDPLRMIELVQKQKHIRFSGADKLRMELAKMPDINQRVNAVRQLL
KSLY
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttaccttcaatacccaaactgctttccagcctgaagcccggccaacgattcaac
catccctgcccggccggttcgggagatgcctggctattggctgaactggcccaggccacc
cgaaaaaccattgttgtgctgtgtgccgaccccttgcaggcgcagcggctggccgaagaa
accagacgtttcaacccgcaagtcaaggcacgccagctccccgattgggaaaccctgccc
tatgacggcttttcaccccaccaggaccttatttccgcacgcctgaaaaccctgcatgcc
ctcatgcttgaagaggtggacatccttaccgtaccggtcaccacggccctgtaccggcta
ccgccgccctcttttctggctgcctacaccttttcattcaaaaaaggcgatcgcgttaat
gagtcagccctgcgtgaacaactcatcctggccaactacacccatgtaacccaggtaacc
gccgccggtgagttctgcatccgcggcagcttgattgacctgttccccatgggttcggtg
gtgccttaccggatcgatcttttcgatgatgaaatagactccatccgcagttttgatatc
gacacccagcgcagcctgtacccggtcaatgaaatccagctcttgcccggccgtgagttt
cccatggatgaagaagcccgcacccggttccgttcgcgctttcgggaagtatttgagggc
gacccgtcccgctgcctgccttataaagacgtgggtaacggcattgcctttgcaggaatt
gaatactacctgccgctgttttttgatgaaaccgccaccctgttcaattacttgaagcct
gaaaccatcacggtcaccctgggtgatctggaagatgcgattacgcgctttcacagcgac
acaaacagtcgttacaacttcatcaagtcagaccgggaacgacccgtgttgccgcccgaa
caactgttcctgtcgcgagaccagatttacaaccagttcaaaaattttgcccgccttaac
ctggacagcaaacaggcctcagaggaaattacccctgcgcccaatgtagccgttgcccgt
cgtgccgaacacccctttgccaagttgcaggaaatggtcgcacgcggacaacataaaatt
ttactgtgcgccgattcggccggccgtcgcgaaaccctgctgcaaatgttgcaggagcac
atgctgacacccgccaccagccaggaaaccattcacgaatttatcggatccgagtccgct
ttcggcatggtggtggctcccatcaataccggctttctggtcaagcaccttaactttgcc
ctgctcaccgaaaacgacctgtaccccggcacggccacctacacccagcgccgccgcaag
cagcaggaacgcagcagtgatgttgacgccatggtgcgcgacctgtccgaactgcgtgca
ggtgacccggtggtgcatgtccagtacggcattggtcgctaccatggtctggtcaatatg
gacctgggcgaaggcgatgtagaactgctgcacctggaatacgccaacaaaagcaccctg
tatgtgccggtttcacaattacacgtcattgcgcgctatagtggtgccgaccccgaacag
gcgcccctgcaccagctgggctcgggccagtgggacaaggcccgtaaaaaagccgccaaa
caaatccgcgatgccgctgccgaactgcttaacctgtatgccctgcgggccgcacgccag
ggttattccttcaagctgccctttagcgattaccaaagttttgtggaaggcttcggtttt
gaggaaaccgccgaccaggccgctgccattgaggccgtcatcaatgacatgacttcaggc
aaacccatggaccggctggtgtgcggtgatgtgggttttggcaaaaccgaagtggccctg
cgcgctgccttcctgagtgtggccaatggcaaacaggtggccttgctatgccccaccacc
ctgctggccgaacaacacgcccaaaccttcgccgaccgctttgccgactggcctgtgaac
gtggccgaactgtcacgtttcaggtctggcaaagaagtggcagccaccatagaaggcatt
gccaaaggcacggtggacatcgtcattggcacccataaaatcctttccaaagacgtccag
ttcaaggagctgggcctggtgattattgatgaagaacaccgctttggcgtgcgccagaaa
gaggccctgaaagcactgcgggctgaagtggatgtattaacgcttaccgccaccccgatt
ccccgtaccctgggcatgtcactggaaggcatccgcgacttttcagtgattgccactgct
ccgcaaaaacggctggccatcaaaacctttgtacgccgtgaagacggcagcaccattcgg
gaggccgtgctgcgtgaactcaaacgtggcggacaggtttactttttgcacaatgaagtg
gaaaccatcaacaaccgcaaggcacgcctgcaagaactggtgcccgaagcccgtattgcc
gtggctcatggccaaatgcccgagcgcgaactggaagaagtcatgaaaggcttctaccag
cagcgtttcaatgtgctgctgtgcaccaccattattgaaaccgggattgacgtacccagt
gccaacacgattattattcatcgtgccgaccgtctgggcctggcccagctgcaccagctg
cgcggccgggttggccgctcacaccaccaggcctatgcctacctgttaacgccgggcgag
gatgcgattaccaacaatgccaaaaaacgccttgaagcgatccagtccatggaagagctg
ggttcgggctttttcctggccatgcacgacctggaaattcgtggtaccggtgaagtgctg
ggcgaatcacaatctggcaatatccatgaaattggcttctccatgtatactgacatgctg
aacgaagcagtacgcgccctgaaagccggtgaagaacctgatctggagtcgccctttgcg
ccggtctgtgaagtcaagctgcatacttccgccctgctgccttcggattactgtggtgac
gtgcatgcccgcctgtccatttacaagcgcctgtcacatgccaggaacgaagacgagctg
ctaagcatacaggaagaactgattgaccgttttggcaaactgcctgaaccggccgtcatg
ctgataaccacccaccgactgcgcattctggccgaacccctgggtattatccgccttgat
attagcgatgaacaggccatgctgaattttggccccaaagccaatatagacccgcttcgc
atgatagagctggtacagaaacaaaaacacatccgctttagcggagccgacaaactgcgc
atggaactggctaaaatgcccgatatcaaccagcgcgtgaatgcggtacgccagctgctt
aaatccctatactga
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