Advenella alkanexedens: Q3V95_11770
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Entry
Q3V95_11770 CDS
T09248
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3V95_11770 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaln03019
]
Q3V95_11770 (pnp)
03016 Transfer RNA biogenesis [BR:
aaln03016
]
Q3V95_11770 (pnp)
Enzymes [BR:
aaln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Q3V95_11770 (pnp)
Messenger RNA biogenesis [BR:
aaln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q3V95_11770 (pnp)
Transfer RNA biogenesis [BR:
aaln03016
]
Prokaryotic type
tRNA degradation factors
Q3V95_11770 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
DUF5813
S1_RRP5
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WKU18958
LinkDB
All DBs
Position
complement(2467174..2469327)
Genome browser
AA seq
717 aa
AA seq
DB search
MFNKVTKSFQYGSHTVVLETGEIARQSSGAVIASMGDTVVLATVVAAKQAKAGQDFFPLT
VDYVEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVIIHVLSV
DPEIDPDIVAMIGASAALSVSGIPFNGPIGAARVAYINGQYVLSPTVSQLQHSEMDLVVA
GTESAVLMVESEARQLSEEVMLGGVVFGHEQMQAAINAIHELVEEAGKPEWDWEPAPKNE
PLIAAVTALASEGLKAAYEIRQKQERTGKLKEVYASVKQALVEQAAANNEDAPDSVAVEN
IMFDLESALVRGQILNGEPRIDGRDTRTVRPISIRLGVLPRTHGSALFTRGETQALVVAT
LGTKQDEQIIDSVMGEYRDRFMLHYNMPPFATGETGRFGSPKRREIGHGRLAKRALVATL
PKHEDFQYTIRVVSEITESNGSSSMASVCGGSLAMMDAGVPVQDHVAGVAMGLIKDGGKF
AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAREGRLHILG
KMNEALTGSRTELSSFAPRMLTMKINPDKIRDVIGKGGATIRALTEETGCHIDISDEGDV
VISSADLEKAKEAERRIAELTAVVEVGQVYEGTVQRLLDFGGIVQILPGRDGLLHISEIA
NYRIANINDVLAVGQKVKVKVIEADDRGRLRLSAKALGGLEGLEGSAQPTETPADGE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaagtgaccaagtcatttcagtatggtagtcatactgtcgttctggaaacg
ggcgagatcgcccgtcaatcctcgggtgctgttattgcatccatgggcgataccgtagtg
ttggccacggttgtggcggccaaacaggccaaagcaggccaggacttctttcccttaacg
gtcgattatgtagaaaaaacttatgcagccggtcgtattcccggcggcttcttcaaacgc
gaaggcaagccttctgaaaaagaaaccctgacatcccgcctgatcgaccgtccattgcgt
ccgttgttccctgaaggcttctacaacgacgttcaggttatcatccatgtcctgtccgta
gatcccgaaattgaccccgatattgttgccatgattggtgcatcggctgccttgtctgtt
tcaggtattcctttcaatggccccattggtgctgcccgtgtagcctatatcaatggtcag
tacgtattaagcccaaccgtttcccagctccagcactccgagatggacctggtggttgcc
ggtaccgaatctgccgtattaatggttgaatcagaagcccggcaattaagcgaagaagtc
atgctgggtggtgtggtgtttggtcatgagcaaatgcaagcagccatcaatgccattcac
gaactggttgaagaagccggcaagcctgaatgggattgggagcctgcgcccaagaatgaa
ccgcttattgctgcggttaccgcgctggcctcagagggcctgaaagccgcttacgaaatt
cgccagaagcaagagcgtaccggcaaactgaaagaagtgtacgccagcgtgaagcaggcg
ctggttgagcaggcggcggcaaacaacgaagacgcgccagatagcgttgcggttgaaaat
atcatgtttgacctggaatcagctctggttcgcggacaaatcctcaatggtgaaccccgt
attgatggccgcgatacccgtaccgtgcgtccaatcagcatccgtctgggtgttttgccc
cgtacccacggcagtgccttgttcacccgtggtgaaacacaggccctggtagtggccaca
ctgggtaccaaacaagacgagcaaattattgactccgtcatgggtgagtaccgtgaccgt
ttcatgttgcattacaacatgcctccgtttgccaccggtgaaaccggccgtttcggttct
cccaaacgccgtgaaatcggtcacggtcgcctggccaaacgcgcactggttgccacgttg
cctaaacatgaagacttccagtacaccattcgcgtggtttctgaaattaccgaatccaac
ggttcttcatccatggcttccgtttgcggtggctcattggccatgatggatgcgggcgtg
cctgttcaggaccacgtggccggtgtcgccatgggtctgatcaaagacggtggcaagttt
gccgtgcttaccgatatcctgggtgatgaagaccaccttggtgatatggattttaaagtt
gccggtaccgaaaaaggcattaccgccctgcaaatggatatcaaaatccagggcattacc
aaggaaatcatgcaggttgccttggcgcaggcccgtgaaggccgcttgcatattctgggc
aaaatgaacgaagcccttaccggctcacgtaccgagttgtccagttttgcgcctcgcatg
ctgaccatgaaaatcaatcccgataaaatccgtgacgtgattggcaagggtggtgcaacc
attcgtgccctgactgaagaaacgggctgccatattgatatcagtgatgaaggtgatgtg
gttatttccagcgctgatcttgaaaaagccaaagaggccgagcgtcgtattgctgagctg
accgctgtggttgaagtgggtcaggtgtacgaaggtacggttcagcgcctgctggatttt
ggcggtattgtgcaaatcctgccaggtcgtgatggcttgctgcacatttctgaaattgcc
aattaccgcattgccaatatcaacgacgtgcttgccgttggccagaaggttaaagttaaa
gtgatcgaagccgatgaccgcggtcgtctgcgtctgtccgccaaggccctgggtggtctg
gagggtctggaaggctcagctcaacccacagaaacccctgctgatggtgaataa
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