Alternaria alternata: CC77DRAFT_1016863
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Entry
CC77DRAFT_1016863 CDS
T05291
Name
(RefSeq) mRNA 3'-end-processing protein rna-14
KO
K14408
cleavage stimulation factor subunit 3
Organism
aalt
Alternaria alternata
Pathway
aalt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC77DRAFT_1016863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_1016863
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CC77DRAFT_1016863
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
TPR_CcmH_CycH
HAT
TPR_19
Motif
Other DBs
NCBI-GeneID:
29109887
NCBI-ProteinID:
XP_018389910
JGI:
1016863
UniProt:
A0A177E0C5
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MADDAELAFLEAQKDEYDPSAGYNMNDAPSGQDEYDPAATYSPHSYQSASMPPESGANSP
PAADTEGENGLQPQPTQTSAEDSAAPQSKRPRTVGGFVDESEDEEEEPAVQPEEANATLN
ATGASETPQPSFTNSPKNTIPNPDVQLHSAQDQAPASISASVAVNEPAPSIASLPNGSTP
VADATKPGAPDVMTVASARPSVAPATPAPMSASLPKARLPQDRVGILEDRIAEDPRGDIE
AWLSLIEEHRRRHKHDDARAVFERFLKVFPSSGEQWVEYIAFETELDELPRVEQLFGRSI
PSAQYLGIYSAYIDFIRRRFNLTTDQNGQNRQTVTQAYEFVLNSVGLDVHAGKLWLDYIE
MLKTGPGVLGGSSWQDMQKMDTLRKVYQRAVSVPHNATLEIWREYDKFEMSVNKVSGRKQ
LQETSPSYMTARSAINVLDNNITRGVNRTTLPKLPPAAGFDGYEEYMNQVKLWHNWIQWE
KSDPLECATDNRELYNKRVLHLYKNALMALRFWPELWYEAAEWCYENNLQAEGDKFLNDG
IDANPESCLLAFKKANQVEQRTDFEDGQAGIVAKGRAVREPYQRLLDTIYDLTAQVKKRE
EHSISRAKEQFEAQKAADDAARAIAQQNEDADDEDEVVQQRRLKEKEDAFNLQLQAMSAG
YNAQTQNLKKTLTYAWIALMRAMRRVQGKGDPRGEVGGFRGIFTEARKKGKLLSEAYVAS
ALIEHHCYQEPAAQKIFERGMKLFPEDEQFALEYIKHLIKLNDSTNARAVFETVVGKLTA
KPETVHRAKSLFAFFHDYEAQFGELAQITKLEQRMATLFPEDPHLHCFSQRFASSTFDPI
SVRHIISPRTQMKPVMPSVMPSIEEQQQPPQQQQPMPAIPPQIVAEQQRLQSPGIANSPH
LGNLVPVTNSPKRPLDDADDVAQPRKLARGESPLKGAAGRRLDAARRNLATTGATPVGQA
PGPPPLPRGVNFLLGIIPPAHTYKETRFKADGLVALLRDVAAIPVPPGQGPPQPQRWGTT
PTTAQQLQSIQEKYGNGGHMPMHPAMAGTNGWGQ
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgctgagctcgccttcctcgaagcgcaaaaggacgaatacgacccttcc
gctggctacaacatgaacgacgccccctccggacaggacgagtacgaccctgccgccaca
tactcaccgcattcgtaccagtcggcatcgatgccgcccgagtctggcgcaaactcacca
ccggccgccgataccgagggcgagaatgggctgcagccccagcctactcagacgtctgca
gaagactccgcagcgccgcagtccaagcgaccgcgaactgtgggtggttttgtcgacgag
agcgaggacgaggaagaggagcccgctgtgcaaccagaagaggcgaatgctacactgaat
gctactggagcttcagagactccccagccatcttttacaaactctccaaaaaataccatt
cccaacccagatgtacagttacatagtgcacaagatcaggctcccgcatctatctctgct
tctgtcgctgtcaatgagcctgctccctctattgcttctcttcctaacggcagtacgcct
gttgcagacgctactaagccaggtgctccagacgtcatgactgttgcttcagctcgccca
tcagtggctccagctactccagctcctatgtctgcttctctgccaaaggctcgtcttcct
caggaccgagtgggtattcttgaagatcgcattgctgaagatccacgtggtgacatcgaa
gcgtggttgagtctaattgaggagcaccgcaggcgacacaagcacgacgatgcacgagct
gtctttgagcgtttcctcaaggtctttccttcatcaggcgagcaatgggtcgagtacatt
gcctttgagactgagcttgatgaattgccaagggttgagcaactctttggtcgctccatt
ccctcagcccaatatctcggcatctactctgcttacatcgacttcatccgccgtcgcttc
aacctcaccactgatcagaatggccagaatcgtcagaccgtcacacaagcttacgagttc
gtgctcaactccgtcggtctcgatgttcatgctggcaagctttggcttgactacatcgag
atgctgaagactggtccaggtgtccttggtggcagcagctggcaggacatgcagaagatg
gatactctgcgtaaggtataccagcgcgccgtctcagtaccacacaatgctaccctagaa
atttggcgggaatacgacaagttcgaaatgagcgtgaacaaggtttcgggtcgcaaacaa
ctccaagagacgtcaccttcctacatgactgcacgcagcgcgatcaacgtcctagacaac
aacatcacgaggggcgtcaaccgaaccaccttacccaaacttccacccgctgctggcttc
gatggttacgaggagtacatgaatcaagtgaagctatggcacaactggattcagtgggag
aagagtgacccactcgagtgcgcgaccgacaatcgggagctatacaacaagcgtgttctt
catttgtacaagaatgctctcatggccctccgcttctggccggaactctggtacgaagca
gccgagtggtgctacgagaacaacctgcaggctgaaggcgacaaattcctcaacgacggc
attgacgcgaaccccgagagttgtctcctagcttttaagaaggccaaccaggtcgagcaa
cgcaccgacttcgaagacggtcaggcgggcatcgttgccaagggcagggcggtacgggag
ccataccaaaggcttttagacaccatctacgatctgacagcgcaagtcaagaagcgagag
gagcattccatctcccgcgcgaaagagcagttcgaggcacagaaggctgcagacgatgcc
gctcgcgcaatcgcacagcaaaatgaagacgctgacgacgaagacgaggttgtgcagcag
cgacgcttgaaagaaaaggaggatgccttcaaccttcaactccaggccatgtctgccggg
tacaatgcgcaaacacaaaacctcaagaagacactcacgtacgcatggatagctctgatg
cgggctatgcgccgtgttcaaggtaagggagatcctagaggcgaggttggtggcttccgt
ggtattttcacagaggctcgtaagaagggcaagctgctcagtgaagcctacgtcgccagt
gcactcatcgagcatcattgctatcaggaaccggctgcacaaaagatctttgagcggggc
atgaagctattcccagaggatgagcaattcgcattggaatacatcaagcacctcatcaag
ctcaatgattctactaatgctcgtgccgtcttcgagaccgtcgttggcaagctcacggct
aagcccgagaccgttcatagggcaaaatcgctcttcgccttcttccacgactacgaagcc
cagtttggtgagctggctcagatcacaaaactcgaacagcgcatggcgactctctttccc
gaagatcctcacctgcactgcttctcgcagcgcttcgcgagctcgaccttcgaccccatc
tccgttcgccatataatctcgcctcgcacacaaatgaagccagtcatgccttcggtcatg
ccttctattgaggagcagcagcagccgccgcaacaacaacagccgatgcctgcgatacca
ccgcaaattgtagccgagcaacagcgccttcaatctcccggcattgcaaactccccacat
cttggaaacctggtccctgttacgaactcaccgaagcgccctctagacgatgcggacgac
gttgcacaacctcgtaagcttgctcgcggcgagtcacctctcaagggtgcggcaggacgc
cgtctcgatgctgcacgccgcaacctagccacgaccggtgccacacccgttggtcaggct
ccagggccgccacctctgcctcgtggagtcaatttcctccttggcatcattcctcctgca
cacacatacaaggagacgcgcttcaaggctgacggcttggtcgctctgttgcgtgacgtc
gctgccatccctgttcctcctggccaaggaccgccacagccgcagcgttggggtactaca
cctacaacggcacaacagctacagagcatacaggagaagtacggcaacggcggacatatg
ccgatgcacccggcgatggctggcacaaatggttggggccaatag
DBGET
integrated database retrieval system
