KEGG   Alternaria alternata: CC77DRAFT_1018631
Entry
CC77DRAFT_1018631 CDS       T05291                                 
Name
(RefSeq) ATP-dependent RNA helicase fal1
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
aalt  Alternaria alternata
Pathway
aalt03013  Nucleocytoplasmic transport
aalt03015  mRNA surveillance pathway
aalt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC77DRAFT_1018631
  09122 Translation
   03013 Nucleocytoplasmic transport
    CC77DRAFT_1018631
   03015 mRNA surveillance pathway
    CC77DRAFT_1018631
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_1018631
   03041 Spliceosome [BR:aalt03041]
    CC77DRAFT_1018631
   03009 Ribosome biogenesis [BR:aalt03009]
    CC77DRAFT_1018631
   03012 Translation factors [BR:aalt03012]
    CC77DRAFT_1018631
Enzymes [BR:aalt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CC77DRAFT_1018631
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CC77DRAFT_1018631
   mRNA cycle factors
    Stress granule specific factors
     CC77DRAFT_1018631
Spliceosome [BR:aalt03041]
 Complex C
  Other components
   EJC/TREX
    CC77DRAFT_1018631
Ribosome biogenesis [BR:aalt03009]
 Eukaryotic type
  90S particles
   Helicases
    CC77DRAFT_1018631
Translation factors [BR:aalt03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CC77DRAFT_1018631
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 Flavi_DEAD TniB AAA_22 UvrD-helicase
Other DBs
NCBI-GeneID: 29110256
NCBI-ProteinID: XP_018388044
JGI: 1018631
UniProt: A0A177DS64
LinkDB
Position
Unknown
AA seq 399 aa
MADGIDRNADDKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQIC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQQVIVGLGDYM
NVQCHPCVGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQ
KERDSIMADFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTQDDVRILRDIELYYSTQIDEMPMNVADLLS
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggccgacggaatcgatcgaaatgccgacgacaagatggagttctccacctccaaggag
gtcacggtcgcgccaaccttcgaggcaatgcacctgaaggagaacttgctacgcggtatc
tacgcctacggttacgaatcgccttcagcggtgcagtcacgtgctattgtgcaaatctgc
aaaggtcgcgacactattgcgcaggcgcagtccggaacaggaaagactgcgactttctcc
atctctatccttcaggtcatcgacacagctgtacgcgagactcaggcactcgtgctgtcg
cccacccgtgaacttgcgacccagattcagcaggttatcgtgggtctcggtgactacatg
aacgtacagtgccatccttgcgttggaggaacaaatgtcggcgaggacatccgcaagctt
gactacggccagcacgtcgtctctggaaccccgggacgcgttgctgacatgattcgccgc
cgcaaccttcgcacacgcaacatcaagatgctcgttctcgacgaagccgatgagcttctc
aaccgaggtttccgtgagcaaatctacgacgtgtaccgctacctaccgcccgcgacacag
gtcgtagttgtttcagctacccttccatacgatgtgctcgagatgacaaccaaattcatg
acggaccccgtgcgcattctagttaagcgtgacgaattgacgctggagggcctcaagcaa
tactttatcgctatcgagaaggaagagtggaagtttgacacgctgtgcgatctctacgac
acactcaccattacacaagcagtcatcttctgcaacacccgccgcaaggttgactggctc
acagacaagatgcgcgaggccaactttaccgtatcctccatgcacggagagatgccccag
aaggagcgagacagcatcatggcagacttccgccaggccaactctcgcgtcctcatctca
accgatgtgtgggcgcgtggtattgacgtgcaacaagtgtcgctggtcatcaactacgat
cttccctcgaaccgtgagaactacatccacaggatcggtcgaagcgggcgattcggacgc
aagggtgtggccatcaacttcgtcacccaggatgatgttcgtatcctccgtgacattgag
ttgtactactctacccagattgacgagatgcctatgaacgttgcggacctgctctcataa

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