KEGG   Alternaria alternata: CC77DRAFT_1022105
Entry
CC77DRAFT_1022105 CDS       T05291                                 
Name
(RefSeq) endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aalt  Alternaria alternata
Pathway
aalt03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CC77DRAFT_1022105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aalt03021]
    CC77DRAFT_1022105
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_1022105
Transcription machinery [BR:aalt03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CC77DRAFT_1022105
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CC77DRAFT_1022105
    U7-dependent histone pre-mRNA processing factors
     CC77DRAFT_1022105
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Lactamase_B_3 Lactamase_B_2
Other DBs
NCBI-GeneID: 29110985
NCBI-ProteinID: XP_018383972
JGI: 1022105
UniProt: A0A177DH19
LinkDB
Position
Unknown
AA seq 863 aa
MAPEDEDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD
DFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS
SNSETKIQMYTEADHLNTYPMIESIDFYTTHTVAGVRITPYPAGHVLGAAMFLMEIAGLK
ILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNR
GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN
IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPGMMQSGTSRE
LLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNSARRPGQRENEQTMIP
RRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSFNAQKAVPTK
IYSPANCEELRIPFKTDKIAKVVGKLASIAPPLPRSLTPNGDESISAAEDQEGEKVDMIS
GVLVQNDFKISLMAPEDLKEYAGLTTTTILCRQHLTLSAAGVDLIRWALEGTFGAIKESS
LTDAAVDGKMNGNGTTHDEEADEEVSRTETKFTVMDCVNVLIKNGGRVEVEWEGNVINDG
IADAVLAVLFTVESSPAAVRQSSKQHSHTHASPPKEEEEDEILTTKLTHRFKKPHPHRTT
DPSTRLARLFLFLEAQFGEEAVRPITLPRNSTTTATANGTPAANPDSMDTSTPDDAKSQE
PFSVAALPPPIAPDDQLSAEDKAELKRLHNLGIPVPGVEIKFDKWVAKVWLEDLDVECAN
NALRARVKAVVERGVETVSGLWR
NT seq 2592 nt   +upstreamnt  +downstreamnt
atggcgcccgaagatgaagacccaatagatccgtccgacgagctcatgttcctctgctta
ggaggcggtaatgaggtcggtcggtcgtgtcatatcattcagtacaagggcaagacggtc
atgcttgatgccggtatgcatcccgcacacgaaggcttgtcggcaatgccattctacgat
gacttcgatcttagcactgtagacgtgctactaatttcacattttcacgtcgaccatgct
gcttccttgccctacgtgcttgcgaagacgaatttcaagggccgcgtattcatgacacat
ccgaccaaagccatctacaagtggcttatccaagactccgttcgtgtcggaaacatgtcg
agcaattctgagaccaagatccaaatgtacactgaggcggaccatctcaatacctatccc
atgatcgaatcgatcgacttctacactacacataccgtcgctggtgtacgaatcacacca
tatcctgccggccacgtactcggagcagccatgtttcttatggagattgcaggcttgaag
atattgttcactggtgactactcgcgagaggacgaccggcatttagtatcagcgtcggta
ccaccgggcgtaaagatcgatgtccttatcaccgagtcgacgtttggtatctcgatgcac
acgccacgtgtcgagcgagaagcacaactcatgaaagctatcaccgatgtcctcaaccgc
ggcggccgagctcttcttccagtattcgctctggggcgagcccaggaacttcttctcatt
ctggacgaatactggagtaagcatccagaggtccagaaaatacccatctactacaactcc
agcttagcacggaagtgtatgcaggtctaccaaacctacgtgtcggccatgaacgacaac
atcaaacgcctcttcgccgagcgcatggccgaggcggaagctgctggagatactggacga
cgtggagcctgggacttcaagtttgtccgctcactcaagagtctcgagcgtttcgacgac
ctgggtggatgtgtcatgcttgcttcgccaggtatgatgcagtccggaacatcgcgtgag
ctgcttgagcgatgggcacctgacccaaggaacggtgtcatcatcaccggttactctgtt
gagggcacaatggcgaagcagattgtccacgagccagatcaaattcctgccatcatgacc
cgagcgagtaactcagcacgacgaccaggtcaaagagagaatgagcagaccatgattccc
cggcgatgcacagtccaggagtacagtttcgcggcgcatgtcgatggaaaagagaacatg
gagtttgtgcaggaagttgctgctcctgttgttattcttgttcacggcgagaagggtaac
atgactcgtctaaagtctaaactcctttccttcaacgctcagaaagccgtccccacgaaa
atttactccccagccaactgtgaggaactccgcattcctttcaaaaccgataagatcgcc
aaggtagtgggaaagttggcctctatcgctccacctctgcctcgctccctgactccgaac
ggcgacgaaagtataagtgctgcagaagaccaagaaggcgagaaggtggatatgattagt
ggagttctcgtccaaaacgacttcaagatttcgctcatggcacccgaagatctgaaggaa
tacgcaggtctaaccacaacgaccattttatgtcgtcagcatctcactctgtcggctgct
ggagtcgatctaatacgatgggcgctcgaaggaacctttggtgctatcaaagagagcagt
ctcaccgacgctgccgttgacggtaagatgaacggcaacggcacgactcacgatgaggag
gcagatgaagaagtcagccgaacagaaacaaagttcacggtaatggactgcgtgaatgtc
ctcatcaagaacggaggaagagtagaagtagaatgggaaggcaacgtaatcaacgacggt
atcgccgacgccgttcttgcagttctcttcaccgtcgagtcttctccagcagctgttcga
caatcttcaaaacaacactctcatacccatgcatccccacccaaagaagaagaggaagac
gaaatactcaccacaaaactgacccaccgcttcaagaagcctcatcctcaccgcacaaca
gacccttccacccgtctggcccgcctcttcctcttcctagaagctcagttcggcgaagaa
gcagtccggcccattactctccctcgcaacagcactacaaccgctactgcgaacggcact
ccggcagccaaccctgattcaatggatacctcaactccagatgatgccaagtcacaagag
ccctttagtgttgctgctctcccgcctcccattgcaccagacgaccagttgtccgcagaa
gacaaagcagagctcaaacgtctacacaacctaggtatacctgttcctggtgtcgagatt
aagtttgacaagtgggtggcgaaggtttggttggaggatttggatgtggagtgcgcgaat
aatgcgcttagggcgagggtcaaggctgtggttgagaggggggttgagacggttagtgga
ttgtggcggtag

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