Alternaria alternata: CC77DRAFT_1022105
Help
Entry
CC77DRAFT_1022105 CDS
T05291
Name
(RefSeq) endoribonuclease YSH1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aalt
Alternaria alternata
Pathway
aalt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC77DRAFT_1022105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalt03021
]
CC77DRAFT_1022105
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_1022105
Transcription machinery [BR:
aalt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CC77DRAFT_1022105
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CC77DRAFT_1022105
U7-dependent histone pre-mRNA processing factors
CC77DRAFT_1022105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_3
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
29110985
NCBI-ProteinID:
XP_018383972
JGI:
1022105
UniProt:
A0A177DH19
LinkDB
All DBs
Position
Unknown
AA seq
863 aa
AA seq
DB search
MAPEDEDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD
DFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS
SNSETKIQMYTEADHLNTYPMIESIDFYTTHTVAGVRITPYPAGHVLGAAMFLMEIAGLK
ILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNR
GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN
IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPGMMQSGTSRE
LLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNSARRPGQRENEQTMIP
RRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSFNAQKAVPTK
IYSPANCEELRIPFKTDKIAKVVGKLASIAPPLPRSLTPNGDESISAAEDQEGEKVDMIS
GVLVQNDFKISLMAPEDLKEYAGLTTTTILCRQHLTLSAAGVDLIRWALEGTFGAIKESS
LTDAAVDGKMNGNGTTHDEEADEEVSRTETKFTVMDCVNVLIKNGGRVEVEWEGNVINDG
IADAVLAVLFTVESSPAAVRQSSKQHSHTHASPPKEEEEDEILTTKLTHRFKKPHPHRTT
DPSTRLARLFLFLEAQFGEEAVRPITLPRNSTTTATANGTPAANPDSMDTSTPDDAKSQE
PFSVAALPPPIAPDDQLSAEDKAELKRLHNLGIPVPGVEIKFDKWVAKVWLEDLDVECAN
NALRARVKAVVERGVETVSGLWR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgaagatgaagacccaatagatccgtccgacgagctcatgttcctctgctta
ggaggcggtaatgaggtcggtcggtcgtgtcatatcattcagtacaagggcaagacggtc
atgcttgatgccggtatgcatcccgcacacgaaggcttgtcggcaatgccattctacgat
gacttcgatcttagcactgtagacgtgctactaatttcacattttcacgtcgaccatgct
gcttccttgccctacgtgcttgcgaagacgaatttcaagggccgcgtattcatgacacat
ccgaccaaagccatctacaagtggcttatccaagactccgttcgtgtcggaaacatgtcg
agcaattctgagaccaagatccaaatgtacactgaggcggaccatctcaatacctatccc
atgatcgaatcgatcgacttctacactacacataccgtcgctggtgtacgaatcacacca
tatcctgccggccacgtactcggagcagccatgtttcttatggagattgcaggcttgaag
atattgttcactggtgactactcgcgagaggacgaccggcatttagtatcagcgtcggta
ccaccgggcgtaaagatcgatgtccttatcaccgagtcgacgtttggtatctcgatgcac
acgccacgtgtcgagcgagaagcacaactcatgaaagctatcaccgatgtcctcaaccgc
ggcggccgagctcttcttccagtattcgctctggggcgagcccaggaacttcttctcatt
ctggacgaatactggagtaagcatccagaggtccagaaaatacccatctactacaactcc
agcttagcacggaagtgtatgcaggtctaccaaacctacgtgtcggccatgaacgacaac
atcaaacgcctcttcgccgagcgcatggccgaggcggaagctgctggagatactggacga
cgtggagcctgggacttcaagtttgtccgctcactcaagagtctcgagcgtttcgacgac
ctgggtggatgtgtcatgcttgcttcgccaggtatgatgcagtccggaacatcgcgtgag
ctgcttgagcgatgggcacctgacccaaggaacggtgtcatcatcaccggttactctgtt
gagggcacaatggcgaagcagattgtccacgagccagatcaaattcctgccatcatgacc
cgagcgagtaactcagcacgacgaccaggtcaaagagagaatgagcagaccatgattccc
cggcgatgcacagtccaggagtacagtttcgcggcgcatgtcgatggaaaagagaacatg
gagtttgtgcaggaagttgctgctcctgttgttattcttgttcacggcgagaagggtaac
atgactcgtctaaagtctaaactcctttccttcaacgctcagaaagccgtccccacgaaa
atttactccccagccaactgtgaggaactccgcattcctttcaaaaccgataagatcgcc
aaggtagtgggaaagttggcctctatcgctccacctctgcctcgctccctgactccgaac
ggcgacgaaagtataagtgctgcagaagaccaagaaggcgagaaggtggatatgattagt
ggagttctcgtccaaaacgacttcaagatttcgctcatggcacccgaagatctgaaggaa
tacgcaggtctaaccacaacgaccattttatgtcgtcagcatctcactctgtcggctgct
ggagtcgatctaatacgatgggcgctcgaaggaacctttggtgctatcaaagagagcagt
ctcaccgacgctgccgttgacggtaagatgaacggcaacggcacgactcacgatgaggag
gcagatgaagaagtcagccgaacagaaacaaagttcacggtaatggactgcgtgaatgtc
ctcatcaagaacggaggaagagtagaagtagaatgggaaggcaacgtaatcaacgacggt
atcgccgacgccgttcttgcagttctcttcaccgtcgagtcttctccagcagctgttcga
caatcttcaaaacaacactctcatacccatgcatccccacccaaagaagaagaggaagac
gaaatactcaccacaaaactgacccaccgcttcaagaagcctcatcctcaccgcacaaca
gacccttccacccgtctggcccgcctcttcctcttcctagaagctcagttcggcgaagaa
gcagtccggcccattactctccctcgcaacagcactacaaccgctactgcgaacggcact
ccggcagccaaccctgattcaatggatacctcaactccagatgatgccaagtcacaagag
ccctttagtgttgctgctctcccgcctcccattgcaccagacgaccagttgtccgcagaa
gacaaagcagagctcaaacgtctacacaacctaggtatacctgttcctggtgtcgagatt
aagtttgacaagtgggtggcgaaggtttggttggaggatttggatgtggagtgcgcgaat
aatgcgcttagggcgagggtcaaggctgtggttgagaggggggttgagacggttagtgga
ttgtggcggtag
DBGET
integrated database retrieval system