Alternaria alternata: CC77DRAFT_1024438
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Entry
CC77DRAFT_1024438 CDS
T05291
Name
(RefSeq) U4/U6 small nuclear ribonucleo protein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aalt
Alternaria alternata
Pathway
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_1024438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_1024438
Spliceosome [BR:
aalt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
CC77DRAFT_1024438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WDR54
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_WDR19_1st
PROPPIN
Nbas_N
Toprim_3
Motif
Other DBs
NCBI-GeneID:
29111468
NCBI-ProteinID:
XP_018381437
JGI:
1024438
UniProt:
A0A177D916
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MSMHPARQAYVEEENGADDAMEGIDLSSVPLDRDHAMPGGGNASAHSLMEDFDRKRRAAQ
LIVPTADRDVKAKLRSRGEPITLFGEGPSERRDRLRALLAEAAEALGEDAADVDMQDADE
APGDEQEEFYTQGTQSLLDARRDMAKYSLPRAKERVAYQRREATIPLKTHVEFRNTIKDR
LKGFELYGSQTADRPVSIVRVSPNGKYVAYGTWGGKVALLEIPSLEQKKAYRGGHTERAT
GIDWMPGATLEGSNVSTSSVNFASGGAGGKIQLWSLDDDKPLRTLQGHTDRVCRVAFHPC
GRYLASASDDTTWRLWDVNTGQELLMQEGHSKEVYTVSFNGDGSLVASAGLDSIGRVWDV
RTGRVIYMLESHIKPIYGLDWATDGHRLLSGSGDGFMKCWDVRAMRETNSIAANTGGVTD
LRWFKGTDGPASGVPLQENSQGELIPKKASTFVISSGFDKNVQIFSADDWAHCKTLQGHS
GPVFSTDVTSDASWIVSGGKDRTVKLWARDDNGGI
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgcacccggcgcgacaggcttatgtggaggaggagaatggcgcggacgatgcg
atggagggtattgacctctccagcgtgccccttgaccgcgatcatgccatgcccggtgga
ggaaacgcgtcggcccattccctcatggaggatttcgaccgcaaacgacgagcagcgcaa
ctcatcgtaccgaccgccgaccgcgacgtcaaggcaaagctgcgctcgcgaggcgagcct
atcaccttgtttggcgaagggccttcggagcgacgcgaccgacttcgagctctgcttgca
gaagcagccgaagcattgggtgaggatgcggcagatgtggatatgcaagatgcagacgag
gcgcctggtgacgagcaagaagagttctatacacaaggcacacaatcactactcgacgcc
cggcgcgacatggccaaatactctttaccccgcgcaaaggagcgcgtcgcataccagcgt
cgcgaagctaccatcccgctgaaaacccacgtcgagttccgcaacaccatcaaggaccgg
ctgaagggctttgagctctatgggtcgcaaaccgcagatcgcccagtcagtattgtgcgc
gtctcacccaacggcaagtatgtcgcatacggtacctggggtggaaaagttgcgctcctg
gaaatccctagtttggaacagaagaaagcctatcgcggtgggcatacggagcgcgcaact
ggcatagattggatgccaggcgcgacacttgagggcagcaacgtctcgacctctagcgtg
aatttcgcttctggtggagcaggcggcaagatccagctttggtcactagacgacgacaag
ccccttcgcactctccaaggtcacaccgatcgcgtctgtagagtagcgttccatccctgt
ggacggtacttggcctcagcttccgatgacacgacatggcgactctgggacgtcaacacc
ggacaagagctcctcatgcaggagggtcattccaaggaagtctataccgtgagcttcaac
ggcgatgggtccttggttgcaagtgcaggtctcgacagtatcggccgcgtgtgggatgtg
cgcacaggccgtgttatttacatgctggagagccacatcaagcccatctacggcctggac
tgggcaacggatggtcatcgcctactctctggttcaggagatggtttcatgaagtgctgg
gacgtccgcgcgatgagagagacaaactcaattgcggccaacactggaggtgtcaccgac
ctacgatggttcaagggtacggatggaccagccagcggagtgccgctgcaggagaacagc
caaggggaactcataccaaaaaaagcttctacctttgtcatctcttctggatttgacaaa
aacgttcagatcttctcagcagacgactgggcgcactgcaaaacactccaaggtcactct
ggccctgtcttcagtaccgatgtgacgagcgacgcgtcttggatcgtcagtggcggtaaa
gatcgcactgtgaaactgtgggctagagacgataacggaggaatatga
DBGET
integrated database retrieval system
