Alternaria alternata: CC77DRAFT_1053096
Help
Entry
CC77DRAFT_1053096 CDS
T05291
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aalt
Alternaria alternata
Pathway
aalt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CC77DRAFT_1053096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalt03021
]
CC77DRAFT_1053096
Enzymes [BR:
aalt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CC77DRAFT_1053096
Transcription machinery [BR:
aalt03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CC77DRAFT_1053096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Thioredoxin
Motif
Other DBs
NCBI-GeneID:
29113323
NCBI-ProteinID:
XP_018382412
JGI:
1053096
UniProt:
A0A177DCH8
LinkDB
All DBs
Position
Unknown
AA seq
1783 aa
AA seq
DB search
MNTHQPTSSAINGVEFGFLTTNDIKSLSVKRITNPTTFDTLLHPVPGGLHDAALGAFLDN
PCGTCGLTSFLGCPGHCGHIELPVPVYHLTFMDQLLRLLRGKCAYCHQLKLARVQINEFV
SKLRLIRCGLVKEAAEMHEHINMDKGKSSTQNADNSEDDDDDDNADIITQRNSYVKKCMK
RANISKHDARSIRDKNETISDARRQVVKDFYADLSKRKTCGNCQGISPTYRKDRGIKIFR
KAMSQKDKAKMAQLEKRIQNPLDVLARRDAKAKKQHVHADEGVADLDPISDEDEGVDMED
IQQADGSLLATESRMARKAKPATDASESLQEYVSATEVKAAMTLLFEGEPEIMRLLYSPY
GTKSLVDVNADMFFTQAVIVPPNKYRPEDKTGDSIAESARNKLYKSILEACDTIRQISQE
MQGKPNELGYRQRNFDDMQTQFVALQGAVNALIDRDANPVQGRAAVTNADGIKQGLEKKE
GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAMKLTYPEPVTNHNFYDLKEAVL
NGPDKWPGAHAIENEFGQVISLRKKNYEERLALANQLLAPSNSYSNGARNKKVHRHLNNG
DVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELAR
AEAMTVADTDHQYLSATAGKPLRGLIQDHISMGVWLSNKDTFFTREEYHQLLYSCLRPED
GHTTSGRLETVIPAVLKPRPMWTGKQIISTVLKNIKPAEYQELTLTSKSSTNGKLWGAHV
EEQIVIVKDGQLLSGIMDKSQIGPAAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHMR
AFSCGVQDLILTEEGDRARLEELRKAEKIGFEVASKYVTMDAEKIDPTNPELRRRLEAVL
RDDTKQHGLDLLTNTANGKISSTVTAACLPDKLIKPFPKNQMQAMTGSGAKGSMVNANQI
SCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGR
EGLIDTAVKTSRSGYLQRCIIKGMEGLKVEYDTSVRDSDGTMVQFLYGEDGLDTTKQKYL
NDFKFQAENFYSLAQALHTAEAYPKVSSTEAAEHNKKAAKKARKGDVAAMDPATAVYTPS
RHSGSTSEKFLQAKRDYCDQNPDKLLKNKKKDEEGEILKRTFEQMLDLKYLRSLVEPGEA
VGVVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASANISTPSMQLYPHP
ELSKEDNEKFAKSITRLPLSAVLDKVTVTETSGPGEQFGQSRSYKIRLDFYPAKEYTKEY
AIKVRDVAESIEQKFCPRLQKIVRVDLKKKAAEKSLSTAKSAAIPTIGEKTGRSGEQTVE
ESEETIRAGREGGAEDDDSDDGEGDNDTTHAKDRGRREDSVAYEEPEEEEQAVNDRLDRE
DEVSEDDETYGGSPKPSRAVTPDPNSDDEDERMLVPTDESSEIRHDRICHKNSDIFDFKF
DDRKGAFCEITFEFSASTPKLLMLHHVEDAANFATIHVIPGITAAQFSAKSKDNPEDVIN
TEGSNLIAMREYAHIIDVNRTTTNDIVAMLHLYGVEAARATIVREMHGVFSGHGISVDQR
HLNLIADTMTKGGGFTPFNRIGMKGNVSPFMKMSFETTVGFLKDAVMERDWDELKNPSAR
IVVGRLGGIGTGAFDVLAPVKIRDPLKDVAEEVNDVVLNDVREKRDSDSESEEEEEEDED
VDGDIQMNDVEMEDVDAAEEEEVVQQSPKKKDKKSKKHRRSSD
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atgaatacccaccagccaacttcctcggccattaatggcgtcgagtttggcttcttgacc
acaaacgacatcaagtcgctctcggtgaagcgcatcacgaacccgaccaccttcgataca
ctgcttcaccccgtacccggcggtctgcacgatgctgcattgggcgctttcctggacaac
ccatgcggaacatgcggtctcaccagcttcctgggctgtcccggccactgcggccacatc
gagcttcccgtacccgtatatcacctcaccttcatggaccagctgcttcgactgctccgg
ggcaagtgtgcatactgccaccagctcaagctcgcccgcgttcagatcaacgaattcgtc
tccaagctgcggttaatacgatgtggattggtaaaagaggcagccgagatgcacgagcat
attaacatggacaagggcaagtccagcactcagaatgcagacaactcggaagacgacgac
gacgatgacaacgccgacatcatcacacagcgcaacagctacgtcaagaagtgcatgaaa
cgagcaaacatttccaagcacgatgcacgatcgatacgcgacaagaatgagaccatctcc
gacgcgcggcgacaagtggtcaaggacttctacgccgatctcagcaagcgcaagacctgc
ggcaattgccagggcatcagcccaacataccgcaaggaccgtggcatcaagatcttccga
aaggccatgagccagaaagacaaggccaagatggctcagctggaaaagcgcatacagaac
ccgctggatgtcctggctcgcagagacgcgaaggcgaagaagcaacacgtacacgcggat
gaaggagtcgcagacctggacccgatctcggacgaagacgaaggcgttgatatggaggac
atacaacaggccgacgggtcgctccttgccaccgagtcgcgcatggcgcggaaagcgaag
cccgcaaccgatgcctccgagagtctgcaggagtacgtgagtgcaacagaggtcaaggcg
gccatgactctgctcttcgaaggcgagcctgagataatgcggctgctttacagcccttac
ggaaccaagtctcttgtcgatgtaaacgccgacatgttctttactcaagccgtcattgta
ccaccgaacaagtacagaccggaggacaagaccggcgactccattgccgaatccgccagg
aacaagctctacaagagcattctcgaagcatgcgacacgatccgtcaaatcagccaggag
atgcagggtaaacccaacgaacttggataccgacagcgcaacttcgacgacatgcagacc
cagttcgtcgctcttcaaggcgctgtgaacgcgctcatcgaccgcgatgcaaaccccgta
cagggccgcgcggcagtcacaaacgctgatggtatcaagcagggtctggaaaagaaggag
ggtctcttccggaaaaacatgatgggcaagcgtgtcaacttcgccgcgcgcagtgtcatt
tcgcccgacccgaacatcgagacgaacgagattggtgtccctccagtgttcgccatgaag
cttacatacccggaacccgtcacaaaccacaacttttacgatctcaaagaggccgtccta
aacggcccagacaagtggccaggagcgcatgctattgagaacgagtttgggcaagtcatc
tccctgaggaagaagaactacgaggagcgtctagctttggcgaaccagctgctcgcaccc
tcgaactcgtactccaacggtgctcggaataagaaggtgcatcgtcatctgaacaacggc
gacgttgtcatcatgaaccgacaaccgacactgcacaagccttcaatgatggcgcatcga
gcacgtgttctaccaggagagaagaccattcgcatgcactacgccaactgtaacacatac
aacgccgatttcgacggtgacgagatgaacatgcatttcccccagaacgagcttgcccga
gcggaggctatgacggtagcggacacagatcaccaatacctatctgcgactgctggaaag
ccgctgcgtggtttgattcaggaccatatttccatgggagtctggctttcgaacaaggac
acattcttcacacgggaagagtaccaccaactactatactcctgtctgcgacctgaagat
ggacatacgacatcaggcagacttgagactgtgattcctgcagtactaaaaccccggcca
atgtggacaggaaaacagatcatcagcactgttctgaagaacattaagcctgcagaatat
caggaattgacgctcacgtccaagtcatcaaccaatggcaagctttggggtgcccacgtt
gaagagcagattgtcattgtcaaggatggtcaactgctttctggtattatggacaagagt
cagattggacctgccgcaggtggtctgatcaacggcatctacgaggcttacggggagacg
attgctggacgcgcccttagtatcatcggtcggctgcttaccaagatgcttcacatgcgc
gccttctcctgtggtgttcaggatctgattctcacagaggaaggagaccgcgctagattg
gaagaactccgaaaggcagagaagattgggttcgaggtggcctccaagtacgtcactatg
gatgcggaaaagattgaccctaccaacccagagttacggcgacgccttgaagctgtcctg
cgagacgataccaagcaacacggtctcgatctgcttacaaacactgccaacggcaagatc
tcctccacggtcaccgcagcctgtttgcctgacaagctcatcaagccattcccgaagaac
caaatgcaagccatgacaggttctggagccaagggtagtatggtcaacgccaaccagatt
tcatgtaatctcggtcagcaagtcttggaaggtcgaagagttccagtcatgatttctggt
aaaacgctgccatgcttcaagcccttcgagacaagtgttcgtgctggtggctacattgtc
aatcgtttcttgactggtatccgaccgcaagagtactacttccatatgatggctggtcga
gaaggtctcattgataccgctgtcaagacttcgcgctctggttacttgcaacgatgtatt
atcaagggtatggaaggtctcaaggtcgaatacgacacttcagtccgcgactccgacggt
accatggtccagttcctgtacggtgaagatggtctcgacacgacaaagcagaagtacctc
aacgacttcaagttccaggcggagaacttctactcgctagcccaagcgctccacaccgcg
gaagcctacccgaaggtctctagtactgaagcagctgagcacaacaagaaggctgcgaag
aaggccaggaagggtgatgtggcagcaatggatcctgccactgcagtttacacgccatca
cggcatagtggcagtacctctgagaagtttttgcaggctaagcgcgactactgtgaccaa
aaccccgacaagctgctcaagaacaagaagaaagacgaagagggtgagattctcaagcgt
actttcgagcagatgcttgatctcaagtacctcagatctcttgttgaacctggcgaagct
gttggtgtcgtcgctgggcagtctattggtgagccctccacacagatgacgttgaacact
ttccatttggctggtcactctgccaagaacgtcacactcggtatcccacgtctacgagaa
atcgtcatgactgctagtgcgaatatttccaccccatctatgcagctgtatcctcacccc
gagttgtccaaggaagacaacgagaagtttgccaagagtatcactcgtctgccactctcg
gctgtgctcgacaaggtcactgtcactgagacatctggccctggtgaacaattcggccaa
tccaggagctacaagattcgcctggacttctacccagcaaaggaatacactaaagagtat
gccatcaaggttcgcgacgtcgccgagtccatcgaacaaaagttctgtccacgtctccag
aagatcgttcgtgtcgatcttaagaagaaggctgcagaaaagtccttgtcaacagcgaag
tcggctgctatccctactatcggtgagaagactggtaggagtggagagcagacagtcgaa
gagtccgaggagaccatccgggctggtcgggaaggcggagcggaagacgatgacagtgat
gacggcgagggtgacaacgatactactcatgccaaggatcgcggccgacgggaggacagt
gtagcttacgaagagccggaagaggaggaacaggctgtcaacgataggcttgaccgagaa
gacgaggtcagcgaagacgatgagacctacggtggcagccccaagccctcgcgtgcggtt
acccctgaccccaactccgacgatgaggatgaacgtatgctcgtccccaccgacgagtcc
tcagaaatccgccacgaccgtatctgccacaagaacagtgacatttttgacttcaagttc
gatgaccgcaaaggagctttctgcgagattacttttgaattctccgcatctacaccgaag
cttctcatgctgcaccatgtggaagacgctgccaatttcgccactatccacgtcattccc
ggtatcactgccgcccaattttcagccaagtcaaaggacaaccctgaggatgtcatcaat
accgaaggctccaacctcattgccatgcgcgagtacgcacacatcatcgatgtaaaccgt
actacaaccaacgacattgtggctatgttgcatctctacggtgtcgaggccgctcgtgcg
acgatcgtccgcgagatgcacggcgtcttctctggtcacggtatctccgtcgaccaacgc
catctcaacctcatcgccgataccatgactaagggcggtggtttcacaccattcaaccgt
atcggtatgaagggtaacgtgagtcctttcatgaagatgagtttcgaaaccaccgttggt
ttcctcaaggacgctgtcatggagcgcgactgggatgagctcaagaaccccagtgcacgt
attgtcgttggtagattgggtggtatcggtacgggtgcgtttgacgtactcgcaccggtc
aagattagggatccgttgaaggacgttgctgaggaggtcaatgacgtcgtgctcaacgat
gttcgtgagaagcgtgattccgattcggagtctgaagaggaagaagaagaggacgaggat
gtcgacggcgatattcagatgaacgacgtggagatggaggatgtcgatgctgctgaagag
gaagaggttgttcaacaatcacccaagaagaaggacaagaagagtaagaagcacaggcgg
agtagcgattag
DBGET
integrated database retrieval system
