KEGG   Alternaria alternata: CC77DRAFT_1060931
Entry
CC77DRAFT_1060931 CDS       T05291                                 
Name
(RefSeq) LSM-domain-containing protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
aalt  Alternaria alternata
Pathway
aalt03018  RNA degradation
aalt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC77DRAFT_1060931
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CC77DRAFT_1060931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_1060931
   03041 Spliceosome [BR:aalt03041]
    CC77DRAFT_1060931
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CC77DRAFT_1060931
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CC77DRAFT_1060931
Spliceosome [BR:aalt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CC77DRAFT_1060931
SSDB
Motif
Pfam: LSM SM-ATX VWA_3_C LSM12_LSM CooT DUF150_C
Other DBs
NCBI-GeneID: 29113966
NCBI-ProteinID: XP_018386664
JGI: 1060931
UniProt: A0A177DN64
LinkDB
Position
Unknown
AA seq 86 aa
MSLENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEIDPAEGNVQL
PKILLNGNNICMMVPGGDGQTVLEDE
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcgctcgagaacctccttccgctagaactcatcgacaaatgtgtaggttcgcagatt
tgggtcattatgaacggagggaaagaattcaccgggaagctggttggattcgatgactac
gtcaacatggtcttggagaacgtgacggagattgacccggcagagggaaatgtgcagctg
cccaaaattctattgaacggcaacaacatctgcatgatggtgcccggaggagatgggcag
acagttctggaggacgagtag

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