Alternaria alternata: CC77DRAFT_1061573
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Entry
CC77DRAFT_1061573 CDS
T05291
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aalt
Alternaria alternata
Pathway
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_1061573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_1061573
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_1061573
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CC77DRAFT_1061573
Spliceosome [BR:
aalt03041
]
Complex B
Other components
Prp19-related factors
CC77DRAFT_1061573
Complex C
CC77DRAFT_1061573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
Mad3_BUB1_I
TPR_8
ARM_TT21
APOBEC_C
Motif
Other DBs
NCBI-GeneID:
29114041
NCBI-ProteinID:
XP_018385522
JGI:
1061573
UniProt:
A0A177DLS5
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MPGELLRTVTASLSRPTKRKMEPSSDLFLITDQDVAYEQDIQRNAGSVKPWLDYYSFKKS
RGSILEQAFVLERAVTTLPRSYKLWKLYLELRTKHLSKKNPAKFAAHYVKVNALFERALV
LLNKMPRIWEMYLNFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFATSASGETA
VKIWRRYMQIHPEDAEDFIELLKDMRKYTEAVKQYMEILNNPRFKSKEAKGPFQFWTEMI
DLMIDHAKEIDTSDDSGINVEKIIQSGISKFPDQRGILWVGLARYWMHKGEYEKARDVFE
EGVTTVMTVRDFSIVFDTYVEAEEAMIGIKLNEAAARSEKGKIDEAADADLDIRMVRFES
LMQRRPFLLNDVMLRQNPHNVIEWEKRVALWGDNKKEVVQTYTDAIAAINPKKALGKFHE
LWTNYAKLYESGGDLKNARVIMEKAVKVPFKSVSELAEMWCEWAEMELRNENFDKAVDIM
AKATQAPKRSNVDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKVYERIFELRI
ATPQTIVNYANLLEENKYYEDCFKVYERGLDLFSYPVAFEIWNLYLTKAVDRKIGMERLR
DLFEQAVEDCPPKFAKVLYLMYGALEEDRGLARHAMRIYERATRAVADEDRLEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDGEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTSPEFWKKWEAFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQAVARGQQNGAPAD
EDADDADAAGEDAMAALERQARAPAGFVAASTGPQGGNIKQDEEAAANPDAIDLDDDDL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgaactcctcaggaccgtcaccgcgagcctctcgcggcccaccaagcggaag
atggagccgtcgtcggaccttttcctcatcaccgaccaggacgtcgcgtacgagcaggac
atccagcgcaacgcgggcagcgtgaagccctggctggactactacagtttcaagaagtcg
cgtgggagcatcttggagcaggcctttgtgctcgagcgcgccgtcaccaccctgccgcgt
tcctacaagttgtggaagctgtacctcgagctccgcaccaagcacctctccaagaagaat
cctgccaagttcgccgcccactatgtcaaggtcaacgccctcttcgaacgcgccctcgtg
ctgctcaacaagatgccgcgcatctgggagatgtacctcaacttcctcatgcagcagccc
ctcgttaccaccacccgccgcaccttcgaccgagcactgcgcgcccttcccctgacccaa
cacaaccgcatatgggccctgtaccggccgttcgcgacgtctgcgtcgggcgagacggcc
gtcaagatctggcgtcgctacatgcagattcaccccgaagacgccgaggacttcatcgag
ctactcaaggacatgcgcaagtacaccgaggctgtgaagcagtacatggaaattctcaac
aacccgcgcttcaagagcaaggaggcaaagggaccctttcagttttggacagagatgatc
gacctgatgattgaccacgccaaggaaatcgacacgagcgacgacagtggcatcaacgtc
gagaagatcatccagagcggcatctccaagttccccgaccagcgcggtatcctctgggtt
ggcctcgcacggtactggatgcacaagggcgagtacgagaaagcgcgcgatgtcttcgag
gagggcgtgaccactgtcatgactgtgcgcgacttctccatcgtcttcgacacatacgtg
gaagccgaggaggccatgatcggaatcaagctcaacgaggctgctgctcgatcggagaag
ggcaagattgatgaggctgctgacgcggaccttgacatccggatggtccgcttcgaatca
ctcatgcagaggagaccgttcctgctgaacgatgtcatgctaagacagaacccgcacaat
gtcatcgaatgggagaagcgtgtcgcactttggggcgacaacaagaaagaggtggtacaa
acctataccgatgccatcgccgcgatcaatccgaagaaagccctcggtaagttccacgag
ctctggaccaactacgcaaagctctacgaatcaggcggcgatctcaagaacgctcgtgtc
atcatggaaaaggccgttaaggtgccgttcaaatcggtctccgagctggctgagatgtgg
tgcgaatgggctgagatggagctccgcaacgaaaacttcgacaaggccgtagacatcatg
gccaaggccacgcaagcgcctaagcgatcaaacgtcgactacttcgatgagtcgctgtcg
ccacaacagcgtgtacacaagagctggaagctgtggagtttctacgtcgatctcgtcgag
agtgtcagtacgctggaggagacaaagaaggtttacgaaagaatcttcgagctccgcatc
gcgacgccgcagaccattgtcaactacgcaaacctcctggaggagaacaagtactacgaa
gactgcttcaaggtgtacgagcgcggcctcgacctgttcagctaccctgtcgctttcgag
atttggaatctctacctgaccaaggccgtggaccgcaagattggaatggagcggttgcga
gaccttttcgaacaggctgtcgaggattgtccgccaaagtttgccaaggtactgtacctg
atgtacggtgcgcttgaagaggatcgcggcctagccagacatgctatgcgtatctacgag
cgtgctacacgcgccgttgcagacgaagacagactggagatgttcaacttctacatcacc
aagtcggcatccaacttcggtctcacctccacgcgaccgatctacgagcgcgccatcgct
gccctccccgacggtgaggccaaagagatgtgcctcaagtttgccgagatggaacggcga
ctgggagaaatcgaccgagccagagcaatctatggccatgccagccagttctgcgacccg
agaaccagccccgagttctggaagaagtgggaggcgttcgaagtccagcatggaaacgag
gacacatacaaggagatgctgcgcatcaagcgcagtgttcaggctcagtacaacaccgac
gtcaactttatcgcctcccaggctgtcgcccgcggccagcagaatggtgcgcctgccgac
gaagacgccgacgacgccgatgctgctggcgaggatgcaatggccgctctcgaacgtcaa
gctcgcgcaccagctggcttcgtcgctgctagtacaggtcctcaaggcggtaatatcaag
caagacgaagaggcagctgcgaatcccgatgcgatcgatctggacgacgacgacctatga
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