Alternaria alternata: CC77DRAFT_1090672
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Entry
CC77DRAFT_1090672 CDS
T05291
Name
(RefSeq) transcription elongation factor spt6
KO
K11292
transcription elongation factor SPT6
Organism
aalt
Alternaria alternata
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalt03021
]
CC77DRAFT_1090672
03036 Chromosome and associated proteins [BR:
aalt03036
]
CC77DRAFT_1090672
Transcription machinery [BR:
aalt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CC77DRAFT_1090672
Chromosome and associated proteins [BR:
aalt03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CC77DRAFT_1090672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HTH_44
HHH_7
Spt6_S1
SPT6_acidic
Tex_central_region
HHH_9
SH2
Tex_YqgF
POTRA_1
NBD94
Motif
Other DBs
NCBI-GeneID:
29115124
NCBI-ProteinID:
XP_018390505
JGI:
1090672
UniProt:
A0A177DZC9
LinkDB
All DBs
Position
Unknown
AA seq
1415 aa
AA seq
DB search
MADFFDTIADVGSDEEEDEDFDGEAGEAGESRPKKTNGTNGIDDSSEEEDDDDEDRLRQA
SLPEGEGFIADEDDEEDEIAERKRKRRKRKKNREEEEALDDEDLDLIGVEVERPAEEQSR
FKRLKRGHKERVKSRGVDDIFSDDEVNEDYDEPRARLGDEFDDFIEDDKFEDEIEDDRDV
TQPGINLITKGLQAAGLDEGAEEDYRAAFGDGTDYDWALEMQEAEEDEQAGEGRELQLKD
VFEPSQLQERMLTDEDNVIRETDIPERLQLARRSFKEIELTPEDMQARLTEEATWISNML
WPKKGLPRYFLQPFEKAVRKVLEFINLEDYEVPFIFNHRKDYLIHAPSDNDDYDDIDNPP
PMDARPERLLNQADLWEVFEFDLKFRAFAEKRDALRQNYENLKSVYSDITDNEIEELTSR
AITIEEIQELQDYLHYKYSQEINEVRQELNGTQKRANNARSFFDKLRGGKANQFVKAIGI
TPEDFAKRVDGSSRGAYTIEDPPYKVEELADQMAEAPETGATLLRSTKLLFVEDLKMCSR
LRRYLRGSFYQNAQIDCIRTDKGMRKITEDHPYYEFKYLRGVTFSDLQGRPDLFLKMLKA
EAEGLVRVKISMGNYNTFKTRLEEKIISDGVSDISDTWNNLRKELLGAALGKLQDLIANG
VKETLRARCEDELAASARENYYNKLDQAPYKLKSAPLGSVPNVLCLTNGKGQRGDAIMWA
YVENDGRVLEHGRLVEMRLGNAERGIPEGQDIEKLVDVIQRRRPDVIGVSGFAVETRKLY
KDIQEIIGQRGLTGPAYEDEDTGEEKYESLEVIMVNDEVARLYHTSARAVAEFPKYPALT
RYCVALGRYLQNPLAEYASLGKDIVSIPFIPNQTLIPQEKLLDRLETAMVDMVNLVGIDL
PETYDDKYLSKLIPYVCGLGPRKADRLIKAIQANSDEILSRFDLLGVSESRDLKAAMGPK
VFQNCASFLYIPYDSTEESSDYLDYTRVHPEDYDLARKMVADALNMDEEDVKAETDEGGP
SAVVRKMVREETTDLVNDLALEDYANEIEKNFGQRKRATLETIRAELDNPYEEIRQIFAL
LSGSEMFTMLTGETEETLYEGMVVPVTIRRTFPDHIEVKLECGIEGGVSESEFPEGVGSG
GQEPRHVYQNNQIVRARIVYLNRKALTAQLSLRDDLIRQPEKKPYNRAAGEWDEAQEALD
KKAAEKEKEVASGRPNRVVNHPLFFSFNTMQAEEYLGGKETGDLVIRPSSKGFDHLVVTW
KVSNNSYQHLDVLEMNKPNQFSLGKQLKIGKHTYSDLDELIVNHVEAMARKVTEITRDEK
FQPGTREDTEKWLEVYCEANASRSMYAFCSMPKYPGHFWICFQMSAKGPRGAWPIKVVPN
AFELHKNVYPDMVALKNGFKMLITTAAGKNQPPRR
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttcttcgacacaatcgccgatgtaggcagcgacgaagaggaggatgaggac
ttcgatggcgaggctggcgaggccggtgaatccaggccgaagaagacaaatggcacaaac
ggcatcgacgactccagcgaggaggaagacgatgacgatgaagaccgactgcgacaggca
agcttgcccgaaggtgaaggcttcatcgcagacgaggacgacgaagaagatgagatcgcg
gagcgcaagcgcaagcgcagaaagaggaagaagaaccgtgaagaagaggaagccctcgac
gacgaggatctggacctgatcggtgtcgaggttgaacgcccggcggaagaacagtcgaga
ttcaagcgtctcaagcgtggccacaaagagcgcgtaaagtctcgaggtgttgatgacatc
ttctccgatgacgaagtaaatgaagactacgacgagccccgcgcgcgcctaggcgacgaa
tttgatgacttcatcgaggacgacaagttcgaagacgagatcgaagacgaccgcgacgtc
acgcaaccaggcataaacttgatcacgaaaggactgcaagccgccggtctggacgaaggc
gctgaggaagactacagggctgcctttggtgatggcacagattacgactgggcgttggag
atgcaagaggctgaagaggatgagcaagctggcgaaggccgtgaactccaactcaaagat
gttttcgagccatcgcaattgcaggagcgcatgcttacggatgaagacaacgttatccgc
gagaccgacattcccgagcgactgcaattggcccggagatccttcaaggagatcgagctc
acacctgaagacatgcaagcacgcctgactgaggaagctacttggatcagcaacatgctg
tggccaaagaagggtcttccgcgctacttcttgcaacctttcgagaaggctgtgcgtaag
gttctcgagttcatcaatcttgaggactacgaagttccctttatcttcaaccatcgaaaa
gactacctcatccatgcaccgagcgacaacgatgactacgacgatattgataacccgccg
cccatggatgcacgaccggagcgcctgctcaaccaagccgatttgtgggaagtcttcgag
ttcgatctcaagttcagggccttcgcagagaagcgtgacgccctcaggcagaactacgag
aacctcaagagcgtatactctgacatcaccgataacgagatcgaggagttgacgtccaga
gccatcactatcgaagagattcaggaacttcaggattatctgcactacaagtattcgcaa
gagatcaacgaagtccgacaagaattgaatggaacacagaagcgtgccaacaacgcgcga
agctttttcgacaagttacggggcgggaaggcaaatcaatttgtcaaggctatcggcatc
acaccagaggacttcgcgaagagggttgacgggtctagtcgaggcgcgtataccatcgag
gatccgccgtacaaggttgaggagctcgccgaccaaatggccgaggctccagagactggc
gccacccttctcaggtctaccaagcttctgtttgttgaagatttgaagatgtgctcgcgt
ctgcgccgatacttgcgcggtagcttctaccagaatgctcagatcgactgcattcgcacc
gacaagggtatgcgcaagattacagaagaccacccctactatgagttcaaatacctccgc
ggcgtgacattttcggatctccagggtcgaccagatcttttcttgaagatgctgaaagct
gaggcggaaggtctcgttcgggtcaagatttccatgggcaactacaacacgttcaagacg
cgacttgaagagaagatcatctccgatggtgtcagcgacatctccgacacttggaacaac
ctccggaaggaactgctcggtgctgctctaggcaagctacaggatctcatcgcgaacggt
gtcaaggaaactctgcgcgctcgatgcgaagacgagcttgcagcatcagccagagaaaac
tattacaacaagcttgaccaggcaccttacaagctgaagagcgcacctctcggatcggta
cccaacgtcctctgcctgactaacggcaagggtcaacgtggagacgcaatcatgtgggct
tacgtcgagaacgacggacgggttcttgagcacggccgcttagtcgagatgcgacttggg
aacgcagagcgtggtattcctgaaggccaagacatcgagaagctggtagacgtaatacag
cgtcgccgcccagacgtcattggtgtcagtggcttcgcggtggagacacgaaagctgtac
aaggacatacaggagattatcggtcagcgaggtttaacaggtccggcctacgaggatgaa
gacaccggtgaagagaagtacgagtcgttggaagtcattatggtcaacgatgaggtcgct
cgtctttaccacacaagtgctcgggctgtcgccgagttccccaagtatcccgcactaacg
aggtattgcgttgcccttggccgatatctgcaaaacccattggcagaatacgcatcgctc
ggcaaagacatcgtttcgattcccttcattccgaaccaaaccttgattccgcaagagaaa
cttctcgaccgacttgaaaccgccatggtagacatggtcaatcttgtgggtatcgactta
ccggagacctacgacgacaagtacctatcaaagttgataccttacgtgtgtggtctggga
cctcgtaaagctgaccgtttgatcaaagccatccaggcgaacagcgacgagatcttgtcg
cgattcgatctacttggtgtatctgagtcccgcgaccttaaggcggctatgggccccaag
gtcttccaaaactgcgccagtttcctgtatattccttatgactcaacagaggagtcgtcc
gactacctggactacacccgtgtacatccagaagattacgaccttgccaggaaaatggtt
gccgatgctcttaacatggatgaggaagatgtcaaggctgagaccgatgagggtggcccc
agtgctgtcgtcagaaagatggtgagggaagagactaccgatctggtcaacgacttggca
ctcgaagactacgcgaatgaaattgagaagaatttcggtcagcgtaagcgcgcgacgctt
gagacgattcgtgctgagctcgacaacccttacgaggaaattcgacagattttcgcactt
ttgtctggtagcgagatgttcacaatgttgactggtgagacggaagagacactctacgag
ggtatggttgtacctgttaccatcagacgcacgttcccagaccatattgaagtcaagctc
gaatgtggcatcgaaggtggtgtctccgagtcggagttcccagagggcgttggcagtggc
ggacaagagcctcgccatgtctatcagaacaaccagattgtacgcgcacgtatcgtctac
ctcaaccgcaaagctctcaccgctcaactgtcacttcgagacgatctcatccgacaacca
gagaagaagccctacaatcgtgcagctggcgagtgggacgaagcgcaagaagctctcgac
aagaaggctgccgagaaggagaaggaagttgcgtctggtcggcccaaccgtgtcgtcaac
caccctcttttcttttccttcaacaccatgcaagccgaggagtacctgggcggaaaggag
actggcgacctggtcatccgtccatcgtccaagggtttcgatcatctcgtcgtcacatgg
aaagtatccaacaattcataccaacatcttgacgttcttgaaatgaacaagcccaaccag
ttctcgctcggaaagcaactgaagatcggaaagcacacatactccgatcttgacgagttg
atcgtcaaccacgtggaggcaatggcgcgcaaggtcacagaaattacacgagacgagaag
ttccaacctgggacacgagaagatactgaaaaatggctagaggtctactgcgaggccaac
gcttcacgctccatgtacgcattctgcagcatgcccaagtaccccggtcacttctggatc
tgcttccagatgagcgccaagggacctaggggtgcatggcctatcaaggtcgtaccgaac
gcgtttgagctacacaagaacgtctatcctgacatggtagcactcaagaacggtttcaag
atgttgatcaccactgcggctggcaagaatcagcctcccaggcgttga
DBGET
integrated database retrieval system
