Alternaria alternata: CC77DRAFT_679900
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Entry
CC77DRAFT_679900 CDS
T05291
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
aalt
Alternaria alternata
Pathway
aalt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC77DRAFT_679900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_679900
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CC77DRAFT_679900
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CC77DRAFT_679900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
Rrp40_N
Motif
Other DBs
NCBI-GeneID:
29118337
NCBI-ProteinID:
XP_018388395
JGI:
679900
UniProt:
A0A177DT90
LinkDB
All DBs
Position
Unknown
AA seq
345 aa
AA seq
DB search
MPISILPPSAPLPPRRDARDDSDDSDVDMEDDDLVTSDSKAIVTPGEAITSDPQWMRGHG
TYVPSMPPSSTTIISTVAGTLHKTNKLLSVQPLRARYQPEIGDLVVGRIVTVGTKKWNVD
IAAPMHANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDLLVAEVQSLHQDGTASLHTR
SLKYGKLRNGLFTSLSGAGGGILSRKGGVVRSRRQVFTLNTAAGEIDIVLGVNGYIFISK
HITTNADPKEMGINRLDESVTETLYSSQNDDIEPPVMREITRVSTLIRGLVACGAKVDED
TIVKVYEGAVELEAEEQSLGGVERGIGAKGVVEAVLGRLEVEAAG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgccaatctctatcctcccacctagcgcaccgctcccaccacggcgcgatgcaagagac
gactcggacgactcggacgtggacatggaggacgacgacctcgtgacttccgactcaaag
gcgatagtgacacccggtgaagccataacctcggacccgcaatggatgcgcggccacggc
acctacgttccatccatgcctccgtcttccacgacgataatatccaccgtcgccggtacc
ctgcacaaaacaaacaagctgctctcggtacaaccgctgcgcgcccgatatcaaccagaa
attggcgacctggtcgtaggacgcatagtgacagtgggaacaaagaagtggaatgtggac
atcgcagcaccaatgcacgcaaacctgcctttgtctagtataaatctgcccggtggagtg
ttgcgacgaagaacaaccgtagatgaactgaatatccggaccttcttccaagaaggcgat
ctgctcgtcgccgaggtacagagtctgcaccaggacggcaccgcctccctccacacgcga
tcgctcaaatacgggaaactgcgcaacggtctgttcaccagtctgagtggcgctggaggt
ggcatattgagtcgcaagggtggcgttgtgaggagcagacggcaggtctttacgctgaac
acggcggccggcgagatcgacattgtacttggcgtaaacggttacattttcatcagcaag
cacatcacaacaaatgctgacccaaaggagatgggcatcaaccgactggacgagagtgtg
actgagacactgtattcgagccaaaacgacgacatcgaaccgccagtcatgcgggagata
actagggtcagtaccttgatcagggggttggtagcatgtggcgccaaagtggatgaggat
acaattgtcaaggtttacgagggcgcagtcgagcttgaagctgaggagcagagccttggt
ggtgtggagaggggaattggtgccaagggcgttgtagaagctgtgctcggacgattggag
gttgaggccgccggctga
DBGET
integrated database retrieval system
