Alternaria alternata: CC77DRAFT_960229
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Entry
CC77DRAFT_960229 CDS
T05291
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase PRP16
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aalt
Alternaria alternata
Pathway
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_960229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_960229
03009 Ribosome biogenesis [BR:
aalt03009
]
CC77DRAFT_960229
Enzymes [BR:
aalt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC77DRAFT_960229
Spliceosome [BR:
aalt03041
]
Complex A
U2 snRNP components
U2 related factors
CC77DRAFT_960229
Complex B
CC77DRAFT_960229
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CC77DRAFT_960229
Ribosome biogenesis [BR:
aalt03009
]
Eukaryotic type
90S particles
Helicases
CC77DRAFT_960229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
SRP54
HA2_N
AAA_19
Flavi_DEAD
AAA_23
AAA_7
T2SSE
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
29121192
NCBI-ProteinID:
XP_018387666
JGI:
960229
UniProt:
A0A177DR26
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MTAMTKREYGDDDSARVKRVKTESNGEGKMDAAANPYLAHWNDEKPVKSEYSGAGTGLQG
FKRHATTTAQANAAEDGPNNAFTGRPLSSKYMSILKKRRDLPVHQQRDEFLKLYQESQIL
VFVGETGSGKTTQIPQFVLFDDLPQENAKMVACTQPRRVAAMSVAQRVAEEMDVELGEEV
GYSIRFEDKTGPNTILKYMTDGMLLREAMNDHNLTRYSTIILDEAHERTLATDILMGLLK
EVVLRRPDLKLIIMSATLDATKFQKYFHNAPLLAVPGRTHPVEVFYTPAPERDYVEAALR
TVLQIHATEGEGDILLFLTGEEEIEDACRKINLEAQDLSREGGAGPLVVYPLYGTLPPAQ
QQKIFNPAPPPSTPGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES
LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEQAFKKELIEQTYPEILRSNLASTVLELK
KLGVDDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTTLGGLASQFPLDPALAVML
ITSPEFYCSNEILSLTALLSVPQIFVRPANNRKRADEMKELFAHPKGDQLTMLNVYHAFK
SEEAQANPKQWCHDHFLSYRALQQADNVRLQLKRIMEREELELMSTPFENKKYYENIQRA
LVAGFFMQVAKRDGNGKSYITVKDEQNVLLHPSTVLAEDSEWVIYNEFVLTTKNYIRTVT
SVKPEWLLDISPNYYDLSQFKKGEIKTALQRVVTKLQRKEAEKPRR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgactgccatgacgaagcgcgaatacggcgacgatgacagtgcccgcgtcaagcgagtc
aagaccgagtccaacggcgaaggcaaaatggacgcggcggcgaatccctacctggcgcac
tggaacgatgagaagcccgtcaagagcgagtacagcggcgccggcacagggctccagggc
ttcaagcgccatgccaccaccacggcgcaggcgaacgccgccgaagacggccccaacaac
gccttcactggacgcccgctctcgagcaagtacatgagcatcctcaagaagaggcgagac
ctgcccgtccaccagcagcgcgacgagttcctcaagctctaccaggagtcgcagatcctc
gtcttcgtcggtgagacgggttccggaaagacgactcagatcccgcagttcgtcctcttt
gacgacctgccgcaggagaatgccaagatggtcgcctgtacccagccgcgtcgtgtcgct
gccatgtccgtcgcccagcgtgtggccgaggagatggacgtcgagctcggcgaggaggtt
ggatacagcattcgtttcgaggacaagacggggcccaacaccatcctcaagtacatgacc
gacggaatgttgttgcgcgaggccatgaacgaccacaacctcactcgctacagcaccatc
atcctcgacgaagctcacgagagaaccctggctaccgatatcctcatgggcctgctgaag
gaggttgttctgaggcggcccgacctcaagctcatcatcatgagtgctacgctcgatgcc
accaagttccagaagtacttccacaacgccccactgctcgccgttcctggacgaacccac
cccgtcgaggtcttctacacacccgcgcccgagcgagactacgtcgaagccgccctgcga
accgtccttcagatccacgccaccgagggcgaaggcgatattctgctgtttttgaccggt
gaggaagagattgaggacgcatgcaggaagataaatctcgaggctcaggacctctctcga
gaaggcggtgctgggccacttgtggtatacccgctgtacggaactctgccgcccgcacaa
cagcagaagatcttcaaccctgcgcctccaccctccactccaggcggccgtcctgggcgc
aaagtcatcgtttccaccaacattgctgagacatctctcactatcgacggtatcgtctac
gttgtggaccctggtttcagcaagcaaaaggtgtacaaccctcgtatccgtgtcgagtct
ctcctggtttcgcccatctccaaggcctcagcccaacagcgagctggtcgtgcgggacgt
acgcgacctggtaaatgcttccgtctttacaccgagcaagctttcaagaaggagctcatc
gaacagacctaccccgaaattctgcgatcgaatttggcaagcaccgttcttgagttgaag
aagctcggagtcgatgatctggtacactttgatctgatggacccacctgcgccagagacg
ctgatgcgtgccttggaggagctcaactacctggcatgtctcgacgacgagggcgagctc
accacacttggagggcttgcctcgcaatttcccctggatcccgccttggcagtcatgctc
atcacatcacccgagttctactgctcgaatgagattttgtcgcttactgcgctactctcg
gtaccccaaatctttgttcgcccagccaacaaccggaagcgagcagacgagatgaaggag
ctttttgcgcatcccaagggcgaccagcttaccatgctgaatgtctaccacgcattcaag
agcgaggaggcacaagcgaacccgaagcagtggtgccacgaccatttcctctcctaccga
gccttgcagcaagccgacaacgtccgtcttcaactcaagcgcataatggagcgtgaggaa
ctcgaattgatgtcaacaccattcgagaacaagaagtactacgagaacattcagcgtgcg
ctcgtggctggcttcttcatgcaagtcgccaaacgcgatggcaacggcaagagctacatt
accgtcaaggacgagcaaaatgttcttttgcaccctagcactgttcttgctgaagacagt
gaatgggtcatctacaacgaatttgtcttgacaaccaagaactatatccgcacagtgact
tcggtcaagcccgagtggctattggacatctcaccgaactactacgacttgtcgcagttc
aagaagggcgaaatcaagacagctctgcagcgggtggttaccaagctccagcgtaaggaa
gcagagaagcccagaagatga
DBGET
integrated database retrieval system
