KEGG   Alternaria alternata: CC77DRAFT_972171
Entry
CC77DRAFT_972171  CDS       T05291                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
aalt  Alternaria alternata
Pathway
aalt03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CC77DRAFT_972171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aalt03021]
    CC77DRAFT_972171
   03019 Messenger RNA biogenesis [BR:aalt03019]
    CC77DRAFT_972171
Transcription machinery [BR:aalt03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CC77DRAFT_972171
Messenger RNA biogenesis [BR:aalt03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CC77DRAFT_972171
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_2 zf-CCCH_3 zf-CCCH_PARP12 zf-CCCH_9
Other DBs
NCBI-GeneID: 29121445
NCBI-ProteinID: XP_018381453
JGI: 972171
UniProt: A0A177DAA0
LinkDB
Position
Unknown
AA seq 255 aa
MTEVMNSAPTPAPEPKPVESQQPQYTFKFSEFLRREYRFGLSPDRPVCKAYLQGHCPDGN
RCPNKHNVSSSYNNLVCKHWLRGLCKKGETCEFLHEYNLRRMPECSYYARTQTCSNGDDC
LYLHIDPEAKRPSCPHYDRGFCPLGPYCALKHNKKEKLCPFYLCGFCPEGKNCKYGAHPR
FPADLKKPEVRVEKSPEELEAERIEREREMMRREEEDRERDERNGHQGGRGFRGNWDRKK
RGRGRGRGGRGRGDY
NT seq 768 nt   +upstreamnt  +downstreamnt
atgaccgaggttatgaactccgccccaacgccagcacccgaaccgaaacccgtagaaagc
cagcaaccacaatacacgttcaaattcagcgagtttctgcgacgcgaatatcgctttggc
cttagtcctgaccgcccggtatgcaaggcatacctccagggtcactgcccggatggcaat
aggtgcccaaacaaacacaatgtctcttcatcctacaacaatctagtatgcaagcattgg
ttgcgtggcctatgcaagaaaggcgaaacatgcgagttccttcacgagtacaacctacga
cgaatgcccgagtgctcctactacgcccggacacaaacgtgctccaatggagacgactgt
ctctacctacatatcgaccccgaggcgaagcgcccctcatgcccacactacgatagaggc
ttctgtccgcttgggccatactgcgcgctcaaacacaacaagaaggagaagctttgtccc
ttctacctctgcggcttctgtcccgagggtaagaactgcaagtacggtgcacacccaagg
tttcctgccgatctcaagaagcctgaggtccgtgtggaaaagagccctgaggagcttgag
gccgagcgaatagagcgcgaacgcgagatgatgagaagagaggaggaggaccgtgagcgt
gacgagaggaacggtcatcaaggtggccgcggtttcaggggcaactgggaccgcaagaag
cgtggaagaggaaggggtagaggtggcaggggacgaggagactattga

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