Alternaria alternata: CC77DRAFT_980139
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Entry
CC77DRAFT_980139 CDS
T05291
Name
(RefSeq) ATP-dependent RNA helicase-like protein sub2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aalt
Alternaria alternata
Pathway
aalt03013
Nucleocytoplasmic transport
aalt03015
mRNA surveillance pathway
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_980139
09122 Translation
03013 Nucleocytoplasmic transport
CC77DRAFT_980139
03015 mRNA surveillance pathway
CC77DRAFT_980139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_980139
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_980139
Enzymes [BR:
aalt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CC77DRAFT_980139
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CC77DRAFT_980139
Spliceosome [BR:
aalt03041
]
Complex C
Other components
EJC/TREX
CC77DRAFT_980139
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CC77DRAFT_980139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4844
Motif
Other DBs
NCBI-GeneID:
29121644
NCBI-ProteinID:
XP_018390531
JGI:
980139
UniProt:
A0A177E120
LinkDB
All DBs
Position
Unknown
AA seq
486 aa
AA seq
DB search
MSHEEDLIDYSDEEIQTTDAPANGSAAASKGGLTAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVPSATYERRRALHYGVRSGICIKKPSAAHWLTFVVPKDWFPRR
SAWCRFQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVATILVMCHTR
ELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHIIVGTPGRINALVR
DRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSATLNKDVRVVCKK
FMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQVIIFVRSTLRCS
ELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAIN
YDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQVELPEFPENGVDS
GTYMDN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgactactccgacgaggagatccagacgactgatgcg
cccgccaacggcagcgcagctgccagcaagggcggcctcaccgctggtgacgctgcaggc
gacaagaagggcagctacgtcggcatccactcaaccggtttccgcgacttcttgctcaag
gacgagctcgtacgagcaatcacggactgtggcttcgaacatccttccgaggtgccttcc
gctacctacgagcgtcgacgcgcactgcattatggcgtgcgcagcggtatatgcatcaag
aagcctagtgctgcccattggctcactttcgtggtcccgaaggactggtttccgaggagg
agtgcatggtgcaggttccagcaagttaccattccccaggccattctaggaaacgatgtc
ctctgccaggccaagtccggtctcggaaagactgccgtcttcgttctcgcaactctccag
cagatggacgagaagcctgagcctggcgttgccactatcctggtcatgtgccacactcgc
gagttggcctaccagatccgcaacgagtacaaccgtttcgccaagttcctgccagacgtc
aaggtcggtgtcttctacggtggaactcccgtccagaaggacatcgagctcctgagcaac
aaggacactcacccccacatcattgtcggtacccccggtcgtatcaacgccctcgtacgc
gacaggcatcttcgccttgccaacctgaagcacttcgtcctcgacgagtgcgacaagatg
ttggaccagcccgacatgcgcaacgatgtccaggccatcttccgtgctactccccagcac
aagcaggttatgatgttctcggccaccctcaacaaggacgtccgcgttgtctgcaagaag
ttcatgcagaacccgctcgagatctacgtcgatgacgagaagaagttgacacttcacggt
ctccagcaatactacatgaagcttgacgagaaggagaagaaccgcaagctcaacgacctt
ctcgacagcttggagttcaaccaggtcatcatcttcgtccgttcgactcttcgctgctct
gagctcgacaagcttcttcgcgagtgcaacttccccagcactgctgtccactccggaatc
agtcaagaagagcgtatcaagcgctacaaggagtttaaggagttccagacccgtatctgt
gtctccactgacatcttcggtcgtggtatcgatgtcgagcgtatcaacgtcgccatcaac
tacgacatgcccgacaaggccgacgcctaccttcaccgtgtcggtcgtgccggtcgtttc
ggaaccaagggtctctccatctcgttcgtgagcagccccgatgacgaggctgtcctcaag
tcgatcgaagagcgcttccaggtcgagctccccgagttcccggagaacggtgtcgactcc
ggcacttacatggacaactag
DBGET
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