Alternaria alternata: CC77DRAFT_993628
Help
Entry
CC77DRAFT_993628 CDS
T05291
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aalt
Alternaria alternata
Pathway
aalt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC77DRAFT_993628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_993628
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_993628
03009 Ribosome biogenesis [BR:
aalt03009
]
CC77DRAFT_993628
03016 Transfer RNA biogenesis [BR:
aalt03016
]
CC77DRAFT_993628
Enzymes [BR:
aalt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CC77DRAFT_993628
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CC77DRAFT_993628
Spliceosome [BR:
aalt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CC77DRAFT_993628
Complex C
U4/U6.U5 tri-SnRNP related factors
CC77DRAFT_993628
Ribosome biogenesis [BR:
aalt03009
]
Eukaryotic type
Pre-60S particles
Helicases
CC77DRAFT_993628
Transfer RNA biogenesis [BR:
aalt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CC77DRAFT_993628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
eIF3_p135
Helicase_dom4_arc
IER
Motif
Other DBs
NCBI-GeneID:
29122012
NCBI-ProteinID:
XP_018383607
JGI:
993628
UniProt:
A0A177DFC1
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDDDMFDVFEGGPSKDTAPKKSKKRQANGTVKSPEPVQDTAMADAPAETTETTNENGNAQ
TLKKKQKRDAEPEPIVTDDFETEQSREVAAAAGLQAQSQEGQAVVLSHQVRHQVALPPDY
DYVPISEHKAPAEPARTWPFTLDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQC
LKNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYR
GSEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITK
THSQPCHVVYTDFRPTPLQHYFFPAGAEGIHLVVDEKGVFREENFQKAMSSIADKGGSEA
KDFMAKRKGKGKDKKTNTGGNKDQTDIYKIVKMIMIKSYNPVIVFSFSKRECENYALSMS
SLAFNDDSEKAMVTKVFNSAIEMLSEEDRQLPQIQHILPLLRRGIGVHHSGLLPILKETI
EILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFIQMSGRAGRR
GLDDRGIVIMMIGEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLER
CFFQFQSTAGVSNLEKQLEELEQEKANTNIVDEPAIKDYYNLRQQLDTHTKDMRDVIMQP
NYCLQFLQGGRLVKIKFKDYDFGWGAVVAYTARKANKGEVLQPQESYIVDVLLPVSSDTK
FVPAVNDGLPPGVRPPAAGDKGKMEVVPVVLNCIESIGHLRVFLPNELKSTEQRNNVRKA
LSEVKKRFPDGIAILDPIENMNIKDDSFKRLLRKIEVLESRLLSNPLHNSPRLPELYSQY
AQKIAIGEKIKNIRKEIASALSVIQLDELKSRKRVLRRLGFIDDADVVQLKARVACEIST
GDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVI
AKMSQESKLTVNEEEYLKSFKYELMEVVYAWSKGATFAEICKMTDVYEGSLIRLFRRLEE
LLRQIAQASKVMGSEELEQKFTAALELVRRDLVAAQSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacatgttcgacgtcttcgagggcggcccttccaaggacaccgcgcccaag
aagagcaagaagcgccaggcgaatggcactgtcaagtcacccgagccggttcaggacacc
gctatggccgatgcacccgcagagacgaccgagacgacgaatgagaacggcaatgcgcag
actctgaagaagaagcagaagcgcgatgcagagcccgagcccatcgttaccgacgacttc
gagactgagcagtcgcgcgaggtcgccgccgccgccgggctacaagcgcagtcgcaagaa
ggccaggcagtggtgctctcgcatcaagtccgccatcaggtcgctctcccaccagactac
gactatgttcccatctccgagcacaaagccccagccgagcccgcgcgcacatggcctttc
accctagatcctttccagcaggtctctatcgcatcgatacagcgaaacgagagtgttcta
gtgtctgcgcatacctcggccggaaagacagttgtggcagaatacgccatcgcacaatgt
ctcaagaacaatcagcgagtcatctacaccagcccgatcaaggcgctcagtaaccaaaag
taccgagaattcatggccgagtttggcgacgtcggccttatgactggtgatgtcaccatc
aaccccaccgcgacttgtctggttatgacgactgagattctccgctctatgttgtacaga
ggttctgagattatgcgcgaagtagcttgggtcgtatttgacgaggtccactacctgcgc
gacaaatcgagaggtgttgtctgggaagagaccatcattctgcttcccgataaggtccgc
tacgtcttcctctccgccaccattcccaatgccatgcagttcgcagaatggatcacgaaa
acccatagccaaccgtgccacgtcgtttacaccgatttccgtccgacgcccctgcaacac
tatttcttccctgctggtgccgagggtatacatctggtggtagacgaaaagggtgtgttc
cgtgaagagaacttccagaaggccatgtcgtctattgcggacaagggtggaagtgaggct
aaggactttatggcgaaacgtaaaggcaaaggcaaagacaaaaaaaccaacacgggcggc
aacaaggatcagacggatatctacaagattgttaagatgatcatgatcaaaagctacaac
ccggtcattgttttcagtttcagtaagagggaatgcgagaattacgcactctccatgagc
tcgctagcgttcaacgacgactcggaaaaggccatggtcacaaaggtctttaacagcgcc
atcgagatgctctcagaggaggaccgccaactaccccagattcaacacatccttccccta
ctccgaaggggtattggtgttcatcactctggactgctacctatcctgaaggagactatc
gagattttgttccaggaggggctgatcaaggtgcttttcgctactgagacattctctatt
ggattgaacatgccggctaagacagtcgtgtttaccagtgtgcgcaaattcgatggagta
tcgcagcgatgggttacgccttccgaattcatccagatgtctggtcgagccggtcgtcgt
ggtctcgatgaccgtggtattgtcatcatgatgatcggcgagcagatggagccggctgtg
gcgaaggaaatcgtccgcggtcaacaggacaatctcaactccgctttccacttgggttac
aacatgattctcaaccttatgcgagttgagggcatatctcccgagtttatgctggagagg
tgtttcttccagttccagagcacagcgggtgtctccaatcttgagaaacaacttgaagag
cttgagcaagagaaggcgaacacgaacattgttgacgagcctgcaatcaaagactactac
aatctgcggcagcagctggatacacacactaaagacatgcgcgatgtgatcatgcagccc
aactactgcttgcaattcttgcaaggtggtcggttggtaaagatcaagttcaaagactac
gacttcggctggggcgctgttgtagcgtacactgctcgcaaggctaacaagggagaagtc
ctgcaacctcaagagtcgtacattgttgacgtgctactgcccgtcagcagcgataccaag
tttgttcctgcggtcaacgatggtctgccacccggtgtgcgaccacctgcggccggagac
aaaggcaagatggaggttgtgcctgtagtcctgaactgcattgaatcgattggccatctc
cgagtattcctgcccaacgaactcaagtcgactgagcaaaggaacaacgttcgcaaagcg
ctgagcgaggtcaagaagcgcttccccgacggaattgccattctagatcccattgagaac
atgaacatcaaggacgacagttttaagagactcttaaggaaaatcgaagttctagagtcc
cgcctgctctcgaatcctctgcacaactcgcctagattacccgaactatacagccaatac
gcgcagaagattgcgatcggtgagaagatcaagaacatcaggaaggagattgcgagcgcc
ctgtcagtcatccaactggacgagctgaagagcaggaaacgtgtgttgcgacgacttggc
ttcattgacgatgcggacgtcgtccagctcaaagcccgtgttgcttgcgagatcagcact
ggagatgagcttgtgcttagcgagctgctcttcaatcgtttcttcaacgagctcacgcca
gagcaatgtgctgcttgtctcagttgtttcatctttgaggagaagacgcaggaagtgccg
gcgctcaaggaagagcttgccaaaccgtatcgcgagatccagcagcaggctagggtgatt
gcgaagatgtcacaagagagcaagctgactgtcaacgaagaggagtacctcaagtcattc
aagtatgagctgatggaggtcgtttacgcgtggtccaagggtgcgacgttcgcagagatt
tgcaaaatgaccgacgtgtacgagggaagtctcatccgtctcttcaggcgactggaagaa
ctgctccgacaaatagctcaagcgtccaaagttatgggcagcgaagagcttgaacaaaag
ttcacggcagcactggagcttgtccgtagggatctggtcgcagcccagtccctgtatcta
taa
DBGET
integrated database retrieval system
