Algihabitans albus: ABWI00_01050
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Entry
ABWI00_01050 CDS
T10848
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aalu Algihabitans albus
Pathway
aalu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI00_01050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalu03019
]
ABWI00_01050
Enzymes [BR:
aalu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWI00_01050
Messenger RNA biogenesis [BR:
aalu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWI00_01050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
XHC50641
LinkDB
All DBs
Position
complement(226382..227677)
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AA seq
431 aa
AA seq
DB search
MTAFDTLGLAEPLLRAVKHAGFTEATPIQAQAIPSALEGRDMLGIAQTGTGKTAAFALPI
LHRLLSQRGRPAPCTCRVLVLAPTRELAAQIEASFRTLSKFMRISTALVTGGAKHGPQIG
ALKRGVDVLVATPGRLIEHLDNGIIRLNTTQVAVLDEADHMLDLGFLPPIRKLMGRLPQE
HQTLLFSATMPKEIAGLADDLLRDPVKVAVTPVATTAERVAQKVYLLDAGMRRDLLIDFL
RQPDFSRTLVFTRTKRGADRLTKQLGDRGVVAAAIHGDKSQSQRTRALEGFKRGKLPVLI
ATDVAARGIDVPEVSHVVNFELPNMPEAYVHRIGRTARAGKEGLAISFCTNDELGLLKDI
QKVVGQLDQEDRRSPEGRRMAAAAQKQPPKRGGRGGGGGNRNRNQGFGKPKQGGQRSGGQ
RQGRPQRRQAA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcttttgacacgctcggcctggccgagcctcttctgcgtgccgtcaagcacgcc
ggcttcaccgaagccacgccgatccaggcccaggccattccctcggcgctggagggccgc
gacatgctgggcatcgcccagaccggcaccggcaagacggcggccttcgccctgccgatc
ctccaccgcctgctgtcccagcgcggccgtccggcaccctgcacctgccgcgtgctggtg
ctggccccgacccgcgaactggccgcccagatcgaggccagcttccgtaccctgagcaag
ttcatgcggatctcgaccgcgctggtcaccggcggcgccaagcacgggccgcagatcggc
gccctgaagcgcggcgtcgacgtgctggtggccacccccggccgcctgatcgagcacctg
gacaacggcatcatccgcctcaatacgacccaggtcgcggtgctggacgaggccgaccat
atgctcgacctgggcttcctgccgccgatccgcaagctgatgggccggctgccgcaggag
caccagaccctgctgttctccgccaccatgccgaaggagatcgccggcctggccgacgac
ctgctgcgcgacccggtcaaggtcgccgtcacgccggtggcgaccacggccgagcgggtg
gcccagaaggtctacctgctggacgccggcatgcgccgcgacctgctgatcgacttcctg
cgccagccggacttctcgcgcaccctggtcttcacccgcaccaagcgcggcgccgaccgc
ctgaccaagcagctcggcgaccgcggcgtggtcgcggcggccatccacggcgacaagtcc
cagagccagcgcacccgcgccctggagggcttcaagcggggcaagctgccggtgctgatc
gccaccgacgtggccgctcgcggaatcgacgtgccggaggtcagccacgtggtgaacttc
gagctgccgaacatgccggaggcctacgtccaccgcatcggccgcaccgcgcgcgccggc
aaggaaggcctcgccatctccttctgcaccaacgacgaactggggctgctgaaggacatc
cagaaggtggtcggtcaactcgaccaggaagaccgccgcagccccgaaggccgccgcatg
gccgcggccgcccagaagcagccgccgaagcgcggcggccgtggcggcggaggcggcaac
cggaaccgcaaccaaggcttcggcaagccgaagcagggtggccagcggtccggaggccag
cgccagggccgcccccagcggcgccaggcggcctga
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