Algihabitans albus: ABWI00_16045
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Entry
ABWI00_16045 CDS
T10848
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aalu Algihabitans albus
Pathway
aalu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWI00_16045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalu03019
]
ABWI00_16045
03009 Ribosome biogenesis [BR:
aalu03009
]
ABWI00_16045
Enzymes [BR:
aalu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABWI00_16045
Messenger RNA biogenesis [BR:
aalu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWI00_16045
Ribosome biogenesis [BR:
aalu03009
]
Prokaryotic type
rRNA processing factors
ABWI00_16045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
XHC49292
LinkDB
All DBs
Position
complement(3483768..3485414)
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AA seq
548 aa
AA seq
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MAKRMLIDATHPDETRVVVVSNGRVEEFDYETAAKAQLKGNIYLAKVTKVEPSLQAAFVD
YGGNRHGFLPFSEIHPDYYRIPIADREALLAEEEALRAKADGAADDEASDEPLDEASEGS
LARAADETEEDGIEENGADLEDAAADSEASAAPETDGTEDDAEGLEATARNGGASGPVEE
IETEGSVDTVGGDEVEEAARRRAKLMRRYKIQEVIKRKQVMLVQVTKEERGTKGAALTTY
LSLAGRYCVLMPNTAKGGGISRKIGNAADRKRLKSVLSELLIPEGMAVIVRTAGAQRTKA
EIRRDYEYLLRLWDDIRTNTLESTAPALIHEEANLIKRAIRDLYARDTEEILVEGDEGYK
AAKAFMKMLMPSHARHVKHYADPKIPLVYRYDVEQQLDLMHEPQVQLKSGGSIVINPTEA
LVAIDVNSGKATRERHIEETALKTNLEAADEVARQLRLRDFAGLIVIDFIDMEESRHNRE
VERRLKEAMKADRARIQLGRISPFGLLELSRQRLRPVSSRPRPKSASTVMAPATAAPTTL
PGALCCAL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcgtatgctgatcgatgccacccacccggacgagacgcgggtcgtggtggtt
tccaacggaagggtcgaagaattcgactacgaaaccgccgctaaggcgcagctcaagggc
aatatctatctcgcaaaggtcaccaaggtcgagccgtcgctccaggccgcctttgtagat
tacggcggtaatcgtcacggtttcctgccgttcagtgaaatccatcccgattactaccgc
attccgatcgccgaccgcgaagcactgctggctgaagaagaggccttgcgcgccaaggcc
gatggggcagcggacgacgaggcatcggacgagcccctcgacgaggcatccgagggctcg
ctggctcgggccgccgacgagaccgaggaagacggcatcgaagaaaacggtgccgatttg
gaagatgccgccgccgacagcgaggcttcggcagccccggagaccgacggtacggaggat
gatgccgagggtctcgaggcgacggcccggaacggcggcgccagcggtccggtcgaagag
atcgagaccgagggcagcgtcgatacggtcgggggcgacgaggtcgaggaggctgcccgt
cgccgcgcaaagctgatgcgccgctacaagatccaggaggtgatcaagcgcaagcaggtc
atgctggtgcaggtgaccaaggaggagcggggcacgaagggcgcggccctgaccacctac
ctgtcgctggcggggcgttactgcgttctcatgccgaacacggccaagggcggaggcatc
tcgcgcaagatcgggaatgccgcggaccgcaagcgtctgaagtcggtgctgagcgagttg
ctgatccccgagggtatggcggtcatcgtgcgtaccgccggagcccagcgcacgaaggcg
gaaatccggcgcgactacgagtatctgctccgtctgtgggacgatattcgcaccaatacg
ctggagtcgacggcgccggctctgattcacgaggaagccaatctcatcaagcgggcgatc
cgcgatctctacgcgcgcgataccgaggagattctggtcgagggcgacgagggctacaag
gctgccaaggccttcatgaagatgctgatgcccagccatgcgcgccatgtgaagcactat
gcggatcccaagattccgctggtctatcgctacgacgtagagcagcagctggacctgatg
catgaaccccaggtgcagctcaagtcgggcggctcgatcgtgatcaacccgacggaggcg
ctggttgcgatcgacgtcaactccggcaaggcgacgcgtgagcgccatatcgaggagacg
gcgctcaagaccaatctggaggccgcggacgaggttgcgcggcagctccgcctgcgcgat
ttcgccggcctcatcgtgatcgacttcatcgatatggaggaatcccggcacaaccgggaa
gtggagcggcgcctgaaagaggcgatgaaagccgatcgtgcgcgcatccagctcggtcgg
atcagccccttcggtctcctggagctgtcgcgtcagcgtctgcgcccagtctcttcgaga
ccgagaccgaagtctgccagtactgtaatggcaccggccaccgccgctccaacaactctg
ccgggcgccttgtgctgcgcgctctga
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